BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0735000 Os03g0735000|AK069296
(511 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0735000 Similar to Glucose-1-phosphate adenylyltransfe... 912 0.0
Os07g0243200 Similar to ADP-glucose pyrophosphorylase large... 637 0.0
Os05g0580000 Similar to ADP-glucose pyrophosphorylase (EC 2... 592 e-169
Os01g0633100 Similar to ADP-glucose pyrophosphorylase subun... 558 e-159
Os09g0298200 Similar to Brittle 2 516 e-146
Os08g0345800 Similar to Glucose-1-phosphate adenylyltransfe... 512 e-145
>Os03g0735000 Similar to Glucose-1-phosphate adenylyltransferase large subunit 2
(EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose
pyrophosphorylase) (AGPASE S)
(Alpha-D-glucose-1-phosphate adenyl transferase) (BLPL)
(Fragment)
Length = 511
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/511 (90%), Positives = 462/511 (90%)
Query: 1 MAAMDLRXXXXXXXXXXXRCGTSLARPWPARAVXXXXXXXXXXXXLXXXXXXXXXXXXXX 60
MAAMDLR RCGTSLARPWPARAV L
Sbjct: 1 MAAMDLRVAAPASVAAAARCGTSLARPWPARAVGGGGGGGGRGRRLSVRTSVATTEAAAA 60
Query: 61 XXXXXXXXXXXXRDSKTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCI 120
RDSKTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCI
Sbjct: 61 AVGASEDAALEARDSKTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCI 120
Query: 121 NSGINKVYILTQFNSASLNRHLSRAYNFSNGVAFGDGFVEVLAATQTPGSEGKRWFQGTA 180
NSGINKVYILTQFNSASLNRHLSRAYNFSNGVAFGDGFVEVLAATQTPGSEGKRWFQGTA
Sbjct: 121 NSGINKVYILTQFNSASLNRHLSRAYNFSNGVAFGDGFVEVLAATQTPGSEGKRWFQGTA 180
Query: 181 DAVRQFDWLFDDAKAKDIDDVLILSGDHLYRMDYMDFVQSHRQRGADISICCLPIDDSRA 240
DAVRQFDWLFDDAKAKDIDDVLILSGDHLYRMDYMDFVQSHRQRGADISICCLPIDDSRA
Sbjct: 181 DAVRQFDWLFDDAKAKDIDDVLILSGDHLYRMDYMDFVQSHRQRGADISICCLPIDDSRA 240
Query: 241 SDFGLMKIDDTGRVIAFSEKPKGDDLKAMQVDTTVLGLPQDEAKEKPYIASMGVYIFKKE 300
SDFGLMKIDDTGRVIAFSEKPKGDDLKAMQVDTTVLGLPQDEAKEKPYIASMGVYIFKKE
Sbjct: 241 SDFGLMKIDDTGRVIAFSEKPKGDDLKAMQVDTTVLGLPQDEAKEKPYIASMGVYIFKKE 300
Query: 301 ILLNLLRWRFPTANDFGSEIIPASAKEINVKAYLFNDYWEDIGTIKSFFEANLSLAEQPP 360
ILLNLLRWRFPTANDFGSEIIPASAKEINVKAYLFNDYWEDIGTIKSFFEANLSLAEQPP
Sbjct: 301 ILLNLLRWRFPTANDFGSEIIPASAKEINVKAYLFNDYWEDIGTIKSFFEANLSLAEQPP 360
Query: 361 RFSFYDANKPMYTSRRNLPPSMINNSKITDSIISHGCFLDSCRIEHSVVGIRSRIGSNVH 420
RFSFYDANKPMYTSRRNLPPSMINNSKITDSIISHGCFLDSCRIEHSVVGIRSRIGSNVH
Sbjct: 361 RFSFYDANKPMYTSRRNLPPSMINNSKITDSIISHGCFLDSCRIEHSVVGIRSRIGSNVH 420
Query: 421 LKDTVMLGADFYETDLERGELLAEGKVPIGIGENTKIQNCIIDKNARIGKNVTISNSEGV 480
LKDTVMLGADFYETDLERGELLAEGKVPIGIGENTKIQNCIIDKNARIGKNVTISNSEGV
Sbjct: 421 LKDTVMLGADFYETDLERGELLAEGKVPIGIGENTKIQNCIIDKNARIGKNVTISNSEGV 480
Query: 481 QEADRTSEGFYIRSGITIVLKNSIIADGLVI 511
QEADRTSEGFYIRSGITIVLKNSIIADGLVI
Sbjct: 481 QEADRTSEGFYIRSGITIVLKNSIIADGLVI 511
>Os07g0243200 Similar to ADP-glucose pyrophosphorylase large subunit 2 (EC
2.7.7.27) (Fragment)
Length = 509
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 293/435 (67%), Positives = 357/435 (82%)
Query: 77 TVVAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSA 136
TV ++ILGGGAGTRLFPLT+ RAKPAVP+GG YRLID+PMSNCINS INK+Y+LTQFNS
Sbjct: 75 TVASIILGGGAGTRLFPLTRTRAKPAVPVGGCYRLIDIPMSNCINSKINKIYVLTQFNSQ 134
Query: 137 SLNRHLSRAYNFSNGVAFGDGFVEVLAATQTPGSEGKRWFQGTADAVRQFDWLFDDAKAK 196
SLNRH++R YN GV FGDGFVEVLAATQT G GKRWFQGTADAVRQF WLF+DA+ K
Sbjct: 135 SLNRHIARTYNIGEGVGFGDGFVEVLAATQTTGESGKRWFQGTADAVRQFLWLFEDARLK 194
Query: 197 DIDDVLILSGDHLYRMDYMDFVQSHRQRGADISICCLPIDDSRASDFGLMKIDDTGRVIA 256
I+++LILSGDHLYRMDYMDFVQ H +GADIS+ C+P+D+SRASDFGLMK D GR+
Sbjct: 195 RIENILILSGDHLYRMDYMDFVQKHVDKGADISVACVPVDESRASDFGLMKTDKNGRITD 254
Query: 257 FSEKPKGDDLKAMQVDTTVLGLPQDEAKEKPYIASMGVYIFKKEILLNLLRWRFPTANDF 316
F EKPK + LK+MQ+D GL + A Y+ASMG+Y+F+ +ILL LLR +PTANDF
Sbjct: 255 FLEKPKDESLKSMQLDMGTFGLRPEVADTCKYMASMGIYVFRTDILLRLLRGHYPTANDF 314
Query: 317 GSEIIPASAKEINVKAYLFNDYWEDIGTIKSFFEANLSLAEQPPRFSFYDANKPMYTSRR 376
GSE+IP +AK+ NV+AYLF+ YWEDIGTIKSFFEANL+L +Q P F FYD KP++TS R
Sbjct: 315 GSEVIPMAAKDYNVQAYLFDGYWEDIGTIKSFFEANLALTDQSPNFYFYDPVKPIFTSPR 374
Query: 377 NLPPSMINNSKITDSIISHGCFLDSCRIEHSVVGIRSRIGSNVHLKDTVMLGADFYETDL 436
LPP+ + N K+ +SI+SHGCFL C ++ SV+G+RSR+ V LKDT+M+GAD+Y+T+
Sbjct: 375 FLPPTKVENCKVLNSIVSHGCFLTECSVDRSVIGVRSRLEPGVQLKDTMMMGADYYQTEA 434
Query: 437 ERGELLAEGKVPIGIGENTKIQNCIIDKNARIGKNVTISNSEGVQEADRTSEGFYIRSGI 496
ER L++GKVP+G+GENT I+NCIIDKNARIGKNV I NS+ VQEA+R EGFYIRSGI
Sbjct: 435 ERFSELSDGKVPVGVGENTIIRNCIIDKNARIGKNVMIMNSQNVQEAERPLEGFYIRSGI 494
Query: 497 TIVLKNSIIADGLVI 511
T+VLKN++I DG VI
Sbjct: 495 TVVLKNAVIPDGTVI 509
>Os05g0580000 Similar to ADP-glucose pyrophosphorylase (EC 2.7.7.27) (Fragment)
Length = 519
Score = 592 bits (1527), Expect = e-169, Method: Compositional matrix adjust.
Identities = 280/439 (63%), Positives = 343/439 (78%), Gaps = 3/439 (0%)
Query: 74 DSKTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQF 133
D V AVILGGG GT+LFPLT RA PAVPIGG YRLID+PMSNC NSGINK++I+TQF
Sbjct: 83 DPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFIMTQF 142
Query: 134 NSASLNRHLSRAYNFSNGVAFGDGFVEVLAATQTPGSEGKRWFQGTADAVRQFDWLFDDA 193
NSASLNRH+ R Y G+ F DG VEVLAATQ PG E WFQGTADAVR+F W+ +D
Sbjct: 143 NSASLNRHIHRTY-LGGGINFTDGSVEVLAATQMPG-EAAGWFQGTADAVRKFIWVLEDY 200
Query: 194 -KAKDIDDVLILSGDHLYRMDYMDFVQSHRQRGADISICCLPIDDSRASDFGLMKIDDTG 252
K K I+ +LILSGD LYRMDYM+ VQ H ADI++ C P+ +SRASD+GL+K D +G
Sbjct: 201 YKHKAIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASDYGLVKFDSSG 260
Query: 253 RVIAFSEKPKGDDLKAMQVDTTVLGLPQDEAKEKPYIASMGVYIFKKEILLNLLRWRFPT 312
RVI FSEKPKG DL+AM+VDT+ L D+ + PYIASMGVY+FK+++LLNLL+ R+
Sbjct: 261 RVIQFSEKPKGTDLEAMKVDTSFLNFAIDDPTKFPYIASMGVYVFKRDVLLNLLKSRYAE 320
Query: 313 ANDFGSEIIPASAKEINVKAYLFNDYWEDIGTIKSFFEANLSLAEQPPRFSFYDANKPMY 372
+DFGSEI+P + E NV+AY+F DYWEDIGTI+SFF+AN++L EQPP+F FYD P +
Sbjct: 321 LHDFGSEILPRALHEHNVQAYVFADYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFF 380
Query: 373 TSRRNLPPSMINNSKITDSIISHGCFLDSCRIEHSVVGIRSRIGSNVHLKDTVMLGADFY 432
TS R LPP+ + +I D+IISHGCFL C IEHS+VG+RSR+ S LK+T+M+GAD Y
Sbjct: 381 TSPRYLPPTKSDKCRIKDAIISHGCFLRECTIEHSIVGVRSRLNSACELKNTMMMGADLY 440
Query: 433 ETDLERGELLAEGKVPIGIGENTKIQNCIIDKNARIGKNVTISNSEGVQEADRTSEGFYI 492
ET+ E LL+EGKVPIG+GENTKI NCIID NAR+G+NV I+NSEGVQE+DR EG+YI
Sbjct: 441 ETEDEISRLLSEGKVPIGVGENTKINNCIIDMNARVGRNVVITNSEGVQESDRPEEGYYI 500
Query: 493 RSGITIVLKNSIIADGLVI 511
RSGI ++LKN+ I DG VI
Sbjct: 501 RSGIVVILKNATIKDGKVI 519
>Os01g0633100 Similar to ADP-glucose pyrophosphorylase subunit SH2
Length = 518
Score = 558 bits (1439), Expect = e-159, Method: Compositional matrix adjust.
Identities = 264/439 (60%), Positives = 332/439 (75%), Gaps = 3/439 (0%)
Query: 74 DSKTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQF 133
D+ V AVILGGG G +LFPLT RA PAVP+GG YRLID+PMSNC NSGINK++++TQF
Sbjct: 82 DASHVSAVILGGGTGVQLFPLTSTRATPAVPVGGCYRLIDIPMSNCFNSGINKIFVMTQF 141
Query: 134 NSASLNRHLSRAYNFSNGVAFGDGFVEVLAATQTPGSEGKRWFQGTADAVRQFDWLFDDA 193
NSASLNRH+ Y G+ F DG V+VLAATQ P E WFQGTADA+R+F W+ +D
Sbjct: 142 NSASLNRHIHHTY-LGGGINFTDGSVQVLAATQMP-DEPAGWFQGTADAIRKFMWILEDH 199
Query: 194 -KAKDIDDVLILSGDHLYRMDYMDFVQSHRQRGADISICCLPIDDSRASDFGLMKIDDTG 252
+I+ V+IL GD LYRM+YM+ VQ H ADI+I C PID SRASD+GL+K DD+G
Sbjct: 200 YNQNNIEHVVILCGDQLYRMNYMELVQKHVDDNADITISCAPIDGSRASDYGLVKFDDSG 259
Query: 253 RVIAFSEKPKGDDLKAMQVDTTVLGLPQDEAKEKPYIASMGVYIFKKEILLNLLRWRFPT 312
RVI F EKP+G DL++M+VDT+ L D+ ++ PYIASMG+Y+ KK++LL++L+ ++
Sbjct: 260 RVIQFLEKPEGADLESMKVDTSFLSYAIDDKQKYPYIASMGIYVLKKDVLLDILKSKYAH 319
Query: 313 ANDFGSEIIPASAKEINVKAYLFNDYWEDIGTIKSFFEANLSLAEQPPRFSFYDANKPMY 372
DFGSEI+P + E NVKA +F +YWEDIGTIKSFF+ANL+L EQPP+F FYD P +
Sbjct: 320 LQDFGSEILPRAVLEHNVKACVFTEYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFF 379
Query: 373 TSRRNLPPSMINNSKITDSIISHGCFLDSCRIEHSVVGIRSRIGSNVHLKDTVMLGADFY 432
TS R LPP+ + KI D+IIS GC C IEHSV+GI SR+ LKDT+M+GAD Y
Sbjct: 380 TSPRYLPPARLEKCKIKDAIISDGCSFSECTIEHSVIGISSRVSIGCELKDTMMMGADQY 439
Query: 433 ETDLERGELLAEGKVPIGIGENTKIQNCIIDKNARIGKNVTISNSEGVQEADRTSEGFYI 492
ET+ E +LL EGKVPIGIGENTKI+NCIID NARIG+NV I+N++GVQE+D EG+YI
Sbjct: 440 ETEEETSKLLFEGKVPIGIGENTKIRNCIIDMNARIGRNVIIANTQGVQESDHPEEGYYI 499
Query: 493 RSGITIVLKNSIIADGLVI 511
RSGI ++LKN+ I DG VI
Sbjct: 500 RSGIVVILKNATIKDGTVI 518
>Os09g0298200 Similar to Brittle 2
Length = 500
Score = 516 bits (1328), Expect = e-146, Method: Compositional matrix adjust.
Identities = 240/425 (56%), Positives = 326/425 (76%), Gaps = 7/425 (1%)
Query: 89 TRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHLSRAYNF 148
TRL+PLTK+RAKPAVP+G YRLID+P+SNC+NS ++K+Y+LTQFNSASLNRHLSRAY
Sbjct: 81 TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYGN 140
Query: 149 SNGVAFGDGFVEVLAATQTPGSEGKRWFQGTADAVRQFDWLFDDAKAKDIDDVLILSGDH 208
+ G +GFVEVLAA Q+P E WFQGTADAVRQ+ WLF++ ++ + LIL+GDH
Sbjct: 141 NIGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE---HNVMEFLILAGDH 195
Query: 209 LYRMDYMDFVQSHRQRGADISICCLPIDDSRASDFGLMKIDDTGRVIAFSEKPKGDDLKA 268
LYRMDY F+Q+HR+ ADI++ LP+D+ RA+ FGLMKIDD GR+I F+EKPKG+ LK+
Sbjct: 196 LYRMDYQKFIQAHRETNADITVAALPMDEERATAFGLMKIDDEGRIIEFAEKPKGEKLKS 255
Query: 269 MQVDTTVLGLPQDEAKEKPYIASMGVYIFKKEILLNLLRWRFPTANDFGSEIIPASAK-E 327
M VDTT+LGL + AKE PYIASMG+Y+F K+++L LLR FP ANDFGSE+IP + +
Sbjct: 256 MMVDTTILGLDTERAKELPYIASMGIYVFSKDVMLKLLRQNFPAANDFGSEVIPGATEIG 315
Query: 328 INVKAYLFNDYWEDIGTIKSFFEANLSLAEQP-PRFSFYDANKPMYTSRRNLPPSMINNS 386
+ V+AYL++ YWEDIGTI++F+ ANL + ++P P FSFYD + +YT R LPPS + ++
Sbjct: 316 MRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAAIYTQPRYLPPSKVLDA 375
Query: 387 KITDSIISHGCFLDSCRIEHSVVGIRSRIGSNVHLKDTVMLGADFYETDLERGELLAEGK 446
+TDS+I GC + C I HSVVG+RS I ++D++++GAD+YET+ ++ L G
Sbjct: 376 DVTDSVIGEGCVIRHCTINHSVVGLRSCISEGAVIEDSLLMGADYYETETDKKALSETGG 435
Query: 447 VPIGIGENTKIQNCIIDKNARIGKNVTISNSEGVQEADRTSEGFYIRSGITIVLKNSIIA 506
+PIGIG+N I+ IIDKNARIG+NV I N + +QEA R ++G++I+SGI V+K+++I
Sbjct: 436 IPIGIGKNAHIRKAIIDKNARIGENVKIINVDNIQEASRETDGYFIKSGIVTVIKDALIP 495
Query: 507 DGLVI 511
G VI
Sbjct: 496 SGTVI 500
>Os08g0345800 Similar to Glucose-1-phosphate adenylyltransferase small subunit,
chloroplast precursor (EC 2.7.7.27) (ADP-glucose
synthase) (ADP-glucose pyrophosphorylase) (AGPASE B)
(Alpha-D-glucose-1-phosphate adenyl transferase)
Length = 479
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 239/425 (56%), Positives = 328/425 (77%), Gaps = 7/425 (1%)
Query: 89 TRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHLSRAYNF 148
TRL+PLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+LTQFNSASLNRHLSRAY
Sbjct: 60 TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGN 119
Query: 149 SNGVAFGDGFVEVLAATQTPGSEGKRWFQGTADAVRQFDWLFDDAKAKDIDDVLILSGDH 208
+ G +GFVEVLAA Q+P + WFQGTADAVRQ+ WLF++ ++ + LIL+GDH
Sbjct: 120 NIGGYKNEGFVEVLAAQQSP--DNPNWFQGTADAVRQYLWLFEE---HNVMEFLILAGDH 174
Query: 209 LYRMDYMDFVQSHRQRGADISICCLPIDDSRASDFGLMKIDDTGRVIAFSEKPKGDDLKA 268
LYRMDY F+Q+HR+ +DI++ LP+D+ RA+ FGLMKID+ GR++ F+EKPKG+ LKA
Sbjct: 175 LYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEGRIVEFAEKPKGEQLKA 234
Query: 269 MQVDTTVLGLPQDEAKEKPYIASMGVYIFKKEILLNLLRWRFPTANDFGSEIIP-ASAKE 327
M VDTT+LGL AKE PYIASMG+Y+ K ++L LLR +FP ANDFGSE+IP A+
Sbjct: 235 MMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPGANDFGSEVIPGATNIG 294
Query: 328 INVKAYLFNDYWEDIGTIKSFFEANLSLAEQP-PRFSFYDANKPMYTSRRNLPPSMINNS 386
+ V+AYL++ YWEDIGTI++F+ ANL + ++P P FSFYD + P+YT R+LPPS + ++
Sbjct: 295 MRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRHLPPSKVLDA 354
Query: 387 KITDSIISHGCFLDSCRIEHSVVGIRSRIGSNVHLKDTVMLGADFYETDLERGELLAEGK 446
+TDS+I GC + +C+I HSVVG+RS I ++D++++GAD+YET+ ++ L +G
Sbjct: 355 DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLGEKGG 414
Query: 447 VPIGIGENTKIQNCIIDKNARIGKNVTISNSEGVQEADRTSEGFYIRSGITIVLKNSIIA 506
+PIGIG+N I+ IIDKNARIG NV I N + VQEA R ++G++I+SGI V+K++++
Sbjct: 415 IPIGIGKNCHIRRAIIDKNARIGDNVKIINVDNVQEAARETDGYFIKSGIVTVIKDALLP 474
Query: 507 DGLVI 511
G VI
Sbjct: 475 SGTVI 479
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,678,755
Number of extensions: 660571
Number of successful extensions: 1446
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1430
Number of HSP's successfully gapped: 6
Length of query: 511
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 406
Effective length of database: 11,553,331
Effective search space: 4690652386
Effective search space used: 4690652386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)