BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0267400 Os09g0267400|AK070630
(210 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0267400 Harpin-induced 1 domain containing protein 316 7e-87
Os08g0324200 Harpin-induced 1 domain containing protein 227 4e-60
Os04g0677300 Pyruvate kinase family protein 96 2e-20
AK072753 90 1e-18
Os01g0812100 Harpin-induced 1 domain containing protein 86 2e-17
Os11g0130400 Harpin-induced 1 domain containing protein 79 3e-15
Os12g0127200 Harpin-induced 1 domain containing protein 75 3e-14
Os02g0507900 Harpin-induced 1 domain containing protein 72 4e-13
>Os09g0267400 Harpin-induced 1 domain containing protein
Length = 210
Score = 316 bits (810), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 162/210 (77%), Positives = 162/210 (77%)
Query: 1 MGKRSAPRYPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKPKAPSYSVSN 60
MGKRSAPRYPDD YKPKAPSYSVSN
Sbjct: 1 MGKRSAPRYPDDGGGGGGGICCVLCWCCCFLFLIVAALAGAAAYALFLYKPKAPSYSVSN 60
Query: 61 MSVSQFDFNSNDLTLYTKLVATVRAENPNEMIGIIYGDGSRTVVSYRGTPLCSGHLPTFY 120
MSVSQFDFNSNDLTLYTKLVATVRAENPNEMIGIIYGDGSRTVVSYRGTPLCSGHLPTFY
Sbjct: 61 MSVSQFDFNSNDLTLYTKLVATVRAENPNEMIGIIYGDGSRTVVSYRGTPLCSGHLPTFY 120
Query: 121 QGFKNVTVMEISMEGRHGFGSGLQSALEESEKEGNVPLDVFVSVPVSLRFGSFDVREVRV 180
QGFKNVTVMEISMEGRHGFGSGLQSALEESEKEGNVPLDVFVSVPVSLRFGSFDVREVRV
Sbjct: 121 QGFKNVTVMEISMEGRHGFGSGLQSALEESEKEGNVPLDVFVSVPVSLRFGSFDVREVRV 180
Query: 181 NVHCALVVDXXXXXXXXXXXXATYQGNVEF 210
NVHCALVVD ATYQGNVEF
Sbjct: 181 NVHCALVVDSISPKKKPTIKSATYQGNVEF 210
>Os08g0324200 Harpin-induced 1 domain containing protein
Length = 242
Score = 227 bits (579), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 108/161 (67%), Positives = 127/161 (78%)
Query: 50 KPKAPSYSVSNMSVSQFDFNSNDLTLYTKLVATVRAENPNEMIGIIYGDGSRTVVSYRGT 109
+PKAPSYSVS+MSV++FD +S+DLT+Y KLVA+VRAENPN+M+GI YG GSR VSYRGT
Sbjct: 82 RPKAPSYSVSDMSVARFDVSSSDLTVYAKLVASVRAENPNDMVGIGYGAGSRAAVSYRGT 141
Query: 110 PLCSGHLPTFYQGFKNVTVMEISMEGRHGFGSGLQSALEESEKEGNVPLDVFVSVPVSLR 169
LCSG LP FYQG +N TV+ ++MEGRHGFG GLQ ALEESE+ GNVPLDV+VS PV+LR
Sbjct: 142 TLCSGRLPAFYQGHRNTTVVRVAMEGRHGFGPGLQGALEESEEAGNVPLDVYVSAPVTLR 201
Query: 170 FGSFDVREVRVNVHCALVVDXXXXXXXXXXXXATYQGNVEF 210
G D+REV VNVHCALVVD A Y+ NVEF
Sbjct: 202 LGDVDLREVTVNVHCALVVDGLSPKKKPAIKSAEYRVNVEF 242
>Os04g0677300 Pyruvate kinase family protein
Length = 255
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Query: 49 YKPKAPSYSVSNMSVSQFDFNSNDLTLYTKLVATVRAENPNEMIGIIYGDGSRTVVSYRG 108
+KPK P + V ++V++FD N+ T+ V + NPN IGI Y DG S+ G
Sbjct: 95 FKPKIPDFHVDRLTVTRFDVNATAATVSDAFEVEVTSTNPNRRIGIYY-DGGEVTASFNG 153
Query: 109 TPLCSGHLPTFYQGFKNVTVMEISMEGRHGFGSGLQSALEESEKEGNVPLDVFVSVPVSL 168
T LC G P YQG ++ I + G S + L ++ G VPL V+ VP+ +
Sbjct: 154 TELCRGGFPALYQGHRSTVRPVILLAGETRLDSAVALQLARQQQAGFVPLTVWARVPIRI 213
Query: 169 RFGSFDVREVRVNVHCALVVD 189
+FG+ + ++ C LVVD
Sbjct: 214 KFGAIKLWKMTGKATCNLVVD 234
>AK072753
Length = 182
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 49 YKPKAPSYSVSNMSVSQFDFNSNDLTLYTKLVATVRAENPNEMIGIIYGDGSRTVVSYRG 108
+ PKAP YSV+ A NPN IGI Y GS V Y
Sbjct: 46 FDPKAPRYSVT-------------------------ATNPNARIGIYYEAGSSLSVWYDA 80
Query: 109 TPLCSGHLPTFYQGFKNVTVMEISMEGRHGFGSGLQSALEESEKEGNVPLDVFVSVPVSL 168
L G LP FYQG +N TV+ + M G+ G + SAL+++++ G VPL VPV +
Sbjct: 81 HRLARGALPAFYQGHRNTTVLAVVMAGQAQLGGAVMSALQDAQRTGAVPLVFRADVPVRV 140
Query: 169 RFGSFDVREVRVNVHCALVVD 189
GS + +V V C LVVD
Sbjct: 141 ELGSLRLWKVTSRVRCDLVVD 161
>Os01g0812100 Harpin-induced 1 domain containing protein
Length = 312
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 49 YKPKAPSYSVSNMSVSQF---------DFNSNDLTLYTKLVATVRAENPNEMIGIIY-GD 98
+KP+ P Y++ +++VS ++ + ATVRA+NPN IG+ Y G
Sbjct: 137 FKPRQPDYTLLSLAVSGLGGILGNASSTAAPAPVSFSPEFDATVRADNPNGKIGVHYEGG 196
Query: 99 GSRTVVSYRGTPLCSGHLPTFYQGFKNVTVMEISMEGRH-GFGSGLQSALEESEKEGNVP 157
GS VSY G L G P FYQG +NVTV+ + +G F L + + + +VP
Sbjct: 197 GSHVAVSYGGVRLADGAWPAFYQGPRNVTVLVATAKGLGIRFSERLLGDIAAAGRLRSVP 256
Query: 158 LDVFVSVPVSLRFGSFDVREVRVNVHCALVVD 189
DV V VPV L+ G V V V CA+VVD
Sbjct: 257 FDVDVKVPVRLQVGGVRTWAVPVRVRCAVVVD 288
>Os11g0130400 Harpin-induced 1 domain containing protein
Length = 276
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 4/144 (2%)
Query: 49 YKPKAPSYSVSNMSVSQFDFNSNDLTLYTKLVATVRAEN-PNEMIGIIYGDGSRTVVSYR 107
++P+APS+SV+++S+ D + +L ++ A VRA+N N+ GI Y G VSY
Sbjct: 110 FRPRAPSFSVASLSIRGLDALAVS-SLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYA 168
Query: 108 GTPLCSGHLPTFYQGFKNVTVMEISMEGRH-GFGSGLQSALEESEKEGNVPLDVFVSVPV 166
G L +G P F+Q +NVTV ++ G F + L + G VPL V VPV
Sbjct: 169 GERLAAGPWPAFHQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPLTVEAIVPV 228
Query: 167 SLRFGS-FDVREVRVNVHCALVVD 189
LRFG V V C + V+
Sbjct: 229 RLRFGKVLRTWTVDVKTRCEVTVN 252
>Os12g0127200 Harpin-induced 1 domain containing protein
Length = 275
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 16/150 (10%)
Query: 49 YKPKAPSYSVSNMSVSQFDFNSNDLTLYTKLVATVRAEN-PNEMIGIIYGDGSRTVVSYR 107
++P APS+SV+++S+ D + +L ++ A VRA+N N+ GI Y G VSY
Sbjct: 111 FRPLAPSFSVASLSIRGLDALAVS-SLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYS 169
Query: 108 GTPLCSGHLPTFYQGFKNVTVMEISMEGRHGFGSGLQSALEESEKE-------GNVPLDV 160
G L +G P F+Q +NVTV ++ G G S EE K+ G VPL V
Sbjct: 170 GERLAAGPWPAFHQAPRNVTVFSTALAG------GGVSLTEEQRKQLAADQAAGAVPLAV 223
Query: 161 FVSVPVSLRFGS-FDVREVRVNVHCALVVD 189
VPV LRFG V V C + V+
Sbjct: 224 DAIVPVRLRFGKVLRTWTVDVKARCEVTVN 253
>Os02g0507900 Harpin-induced 1 domain containing protein
Length = 250
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 19/155 (12%)
Query: 51 PKAPSYSVSNMSVSQFDFNSN-----------DLTLYTKLVATVRAENPNEMIGIIYGDG 99
P+ P Y++ +++V FD + + LT A VR ENPN I I Y +G
Sbjct: 79 PRLPRYAIESLTVQAFDMDYDGHGGEYGYGDPQLTARASFDAAVRFENPNRAIDISYEEG 138
Query: 100 SRTVVSYRGTPLCSGHLPTFYQGFKNVTVMEISM-----EGRHGFGSGLQSALEESEKEG 154
S V Y G L G LP FYQG + V+ ++M EG +Q + G
Sbjct: 139 SSLAVFYGGHRLSEGALPAFYQGHGDAGVVHVAMGDATLEGAGAVAEAMQQVVGGG---G 195
Query: 155 NVPLDVFVSVPVSLRFGSFDVREVRVNVHCALVVD 189
+PL VPV ++ G ++ + C LV+D
Sbjct: 196 ELPLVFRGEVPVRVKVGPITTGKLTPTIRCDLVLD 230
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,450,540
Number of extensions: 195042
Number of successful extensions: 521
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 8
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)