Os02g0507900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os02g0507900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.74 | 0.412 | 3.08 | -0.231 | 0.249 | 0.203 | -0.216 | -0.582 | -0.0398 | 8.92 | 88.87 | 686 | -- | -- |
| 77.43 | 0.41 | 3.08 | -0.181 | 0.249 | 0.191 | 0.046 | -- | -0.0342 | 8.75 | 88.97 | 661 | -- | -- |
| 76.84 | 0.408 | 3.08 | -0.226 | 0.252 | 0.201 | -- | -0.452 | -0.0395 | 8.74 | 88.78 | 647 | -- | -- |
| 77.43 | 0.41 | 3.08 | -0.181 | 0.251 | 0.199 | -- | -- | -0.0343 | 8.7 | 88.85 | 650 | -- | -- |
| 78.51 | 0.413 | 3.08 | -0.225 | -- | 0.206 | -- | -0.513 | -0.0339 | -- | 88.7 | 1535 | -- | -- |
| 78.32 | 0.415 | 3.08 | -0.206 | 0.142 | -- | 0.0509 | -- | -0.00741 | 8.98 | -- | -- | -- | -- |
| 78.33 | 0.414 | 3.08 | -0.204 | 0.142 | -- | -- | -- | -0.00734 | 9.01 | -- | -- | -- | -- |
| 78.88 | 0.414 | 3.09 | -0.172 | -- | 0.189 | -- | -- | -0.0309 | -- | 89.27 | 1541 | -- | -- |
| 78.28 | 0.412 | 3.08 | -- | 0.264 | 0.222 | -- | -- | -0.0176 | 8.73 | 88 | 650 | -- | -- |
| 79.49 | 0.417 | 3.08 | -0.204 | -- | -- | -- | -- | -0.00647 | -- | -- | -- | -- | -- |
| 79.43 | 0.417 | 3.08 | -- | 0.141 | -- | -- | -- | 0.0154 | 9.12 | -- | -- | -- | -- |
| 79.57 | 0.415 | 3.09 | -- | -- | 0.228 | -- | -- | -0.0329 | -- | 90.04 | 1551 | -- | -- |
| 80.59 | 0.419 | 3.08 | -- | -- | -- | -- | -- | 0.0162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.97 | humidity | 80 | 30 | < th | dose independent | rect. | 1 | 4 |
| 5 | 74.10 | humidity | 80 | 30 | < th | dose dependent | rect. | 1 | 4 |
| 9 | 74.26 | humidity | 80 | 30 | < th | dose independent | rect. | 1 | 1 |
| 15 | 74.26 | humidity | 80 | 30 | < th | dose dependent | rect. | 1 | 1 |
| 21 | 74.40 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 2 |
| 22 | 74.42 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 1 |
| 25 | 74.76 | radiation | 20 | 90 | < th | dose independent | rect. | 10 | 1 |
| 26 | 74.78 | humidity | 80 | 720 | < th | dose independent | rect. | 1 | 1 |
| 30 | 74.78 | humidity | 80 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 34 | 74.83 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 5 |
| 40 | 74.97 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 12 |
| 45 | 75.00 | humidity | 90 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 51 | 75.13 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 5 |
| 54 | 75.15 | radiation | 20 | 10 | < th | dose independent | rect. | 11 | 1 |
| 57 | 75.20 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 3 |
| 65 | 75.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 71 | 75.25 | radiation | 20 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 72 | 75.28 | radiation | 30 | 30 | < th | dose independent | rect. | 23 | 12 |
| 73 | 75.28 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 85 | 75.32 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 92 | 75.37 | humidity | 80 | 270 | < th | dose independent | rect. | 7 | 1 |
| 98 | 75.40 | radiation | 40 | 30 | > th | dose dependent | rect. | 13 | 21 |
| 100 | 75.42 | humidity | 80 | 270 | < th | dose independent | rect. | 4 | 4 |
| 101 | 75.42 | humidity | 80 | 270 | < th | dose independent | rect. | 24 | 8 |
| 119 | 75.46 | radiation | 30 | 30 | < th | dose independent | rect. | 11 | 12 |
| 121 | 75.46 | humidity | 80 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 124 | 75.47 | humidity | 80 | 720 | < th | dose dependent | rect. | 21 | 12 |
| 125 | 75.48 | humidity | 90 | 720 | > th | dose independent | rect. | 3 | 1 |
| 157 | 75.54 | humidity | 70 | 720 | > th | dose independent | rect. | 2 | 7 |
| 178 | 75.60 | wind | 1 | 30 | < th | dose independent | rect. | 7 | 3 |
| 179 | 75.60 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 182 | 75.60 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 11 |
| 183 | 75.61 | humidity | 70 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 186 | 75.61 | humidity | 90 | 720 | < th | dose independent | rect. | 1 | 4 |
| 195 | 75.61 | humidity | 70 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 206 | 75.62 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 3 |
| 207 | 75.62 | humidity | 80 | 270 | < th | dose dependent | rect. | 6 | 3 |
| 222 | 75.64 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 3 |
| 266 | 75.68 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 300 | 75.73 | radiation | 40 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 328 | 75.77 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 10 |
| 329 | 75.77 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 339 | 75.79 | humidity | 70 | 30 | < th | dose dependent | rect. | 16 | 18 |
| 341 | 75.80 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 346 | 75.80 | humidity | 70 | 30 | < th | dose dependent | rect. | 7 | 3 |
| 388 | 75.82 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 393 | 75.83 | humidity | 70 | 30 | < th | dose independent | rect. | 16 | 18 |
| 406 | 75.85 | humidity | 70 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 407 | 75.85 | humidity | 70 | 10 | > th | dose independent | rect. | 23 | 12 |
| 415 | 75.86 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 423 | 75.87 | atmosphere | 1000 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 432 | 75.90 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 443 | 75.91 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 16 | 7 |
| 451 | 75.92 | wind | 3 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 452 | 75.92 | radiation | 30 | 10 | > th | dose dependent | rect. | 7 | 3 |
| 463 | 75.92 | humidity | 50 | 30 | > th | dose dependent | rect. | 23 | 12 |
| 478 | 75.94 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 512 | 75.95 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 6 | 2 |
| 523 | 75.95 | humidity | 50 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 545 | 75.96 | temperature | 25 | 10 | > th | dose dependent | sin | 8 | NA |
| 546 | 75.96 | radiation | 40 | 30 | > th | dose dependent | sin | 12 | NA |
| 547 | 75.96 | radiation | 20 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 634 | 76.00 | wind | 3 | 720 | > th | dose independent | rect. | 3 | 1 |
| 653 | 76.01 | temperature | 30 | 10 | > th | dose independent | rect. | 10 | 1 |
| 656 | 76.01 | temperature | 25 | 30 | > th | dose independent | rect. | 6 | 5 |
| 658 | 76.01 | radiation | 40 | 30 | > th | dose independent | rect. | 13 | 21 |
| 665 | 76.02 | radiation | 20 | 270 | > th | dose independent | rect. | 6 | 1 |
| 736 | 76.06 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 14 |
| 737 | 76.06 | radiation | 40 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 756 | 76.06 | radiation | 40 | 10 | < th | dose dependent | rect. | 23 | 12 |
| 766 | 76.07 | humidity | 90 | 720 | < th | dose independent | rect. | 3 | 1 |
| 794 | 76.10 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 1 |
| 802 | 76.11 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 851 | 76.12 | humidity | 50 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 857 | 76.13 | radiation | 30 | 30 | < th | dose independent | rect. | 11 | 6 |
| 907 | 76.15 | radiation | 30 | 30 | < th | dose independent | rect. | 11 | 18 |
| 932 | 76.17 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 934 | 76.17 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 3 |
| 944 | 76.17 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 23 | 12 |
| 948 | 76.18 | wind | 5 | 90 | > th | dose independent | rect. | 2 | 1 |
| 955 | 76.18 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 3 |
| 969 | 76.20 | radiation | 30 | 270 | > th | dose independent | rect. | 10 | 1 |
| 998 | 76.22 | humidity | 60 | 10 | < th | dose independent | rect. | 9 | 1 |