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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0267400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Harpin-induced 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.0311) R2 : 0.199
β1 : 0.331 (0.114) R2dD : 0.0139 R2D : 0.0179
β2 : -- (--) R2dC : -- R2C : --
β3 : 6.51 (0.717) R2dE : 0.291 R2E : -0.106
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 14.5 (1.62) R2dD*E : 0.274 R2D*E : -0.109
γ1 : -0.0985 (0.0665) R2dN8 : 0.00442 R2N8 : 0.00767
σ : 0.582
deviance : 156.12
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.41
memory length : 73
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.1
open length of G : 0.833

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.18 0.582 2.81 0.293 0.209 5.99 0.567 13.4 -0.0959 7.41 24.75 79 14 0.967
177.82 0.621 2.8 0.409 0.146 2.44 -0.556 -- -0.0682 3.75 26.82 136 14 0.34
153.89 0.578 2.82 0.312 0.198 6.16 -- 13.5 -0.0966 6.84 24.67 73 14 0.95
177.43 0.62 2.79 0.392 0.211 2.31 -- -- -0.0658 6.78 26.83 126 14 0.317
156.12 0.582 2.82 0.331 -- 6.51 -- 14.5 -0.0985 -- 24.41 73 14.1 0.833
188.18 0.643 2.81 0.33 0.142 -- 0.44 -- -0.108 9.54 -- -- -- --
188.72 0.643 2.81 0.344 0.156 -- -- -- -0.109 8.1 -- -- -- --
179.68 0.624 2.8 0.384 -- 2.25 -- -- -0.0712 -- 26.48 131 14 0.327
180.83 0.626 2.8 -- 0.22 2.31 -- -- -0.119 7.04 26.35 114 14.2 0.0111
190.06 0.644 2.81 0.345 -- -- -- -- -0.107 -- -- -- -- --
191.83 0.648 2.82 -- 0.159 -- -- -- -0.147 7.95 -- -- -- --
183.02 0.63 2.82 -- -- 2.26 -- -- -0.127 -- 26.2 123 14.2 0.0166
193.2 0.649 2.82 -- -- -- -- -- -0.145 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 153.69 temperature 25.0 90 < th dose dependent rect. 14 1
3 155.84 humidity 90.0 90 > th dose independent rect. 14 1
6 155.84 humidity 90.0 90 > th dose dependent rect. 14 1
9 156.01 radiation 1.0 10 < th dose independent rect. 15 1
53 157.00 temperature 25.0 10 < th dose independent rect. 14 2
55 157.17 temperature 25.0 90 < th dose independent rect. 14 1
75 157.64 wind 1.0 30 < th dose independent rect. 4 1
78 157.72 wind 1.0 30 < th dose dependent rect. 4 1
85 158.31 precipitation 0.1 10 > th dose independent rect. 3 1
89 158.31 precipitation 0.1 10 > th dose dependent rect. 3 1
94 158.62 humidity 80.0 90 < th dose independent rect. 3 4
96 159.03 temperature 25.0 90 < th dose dependent rect. 1 15
100 159.46 temperature 25.0 90 < th dose dependent rect. 3 13
101 159.48 radiation 1.0 10 < th dose dependent rect. 15 1
116 160.12 temperature 20.0 270 < th dose independent rect. 1 6
118 160.17 temperature 20.0 270 < th dose independent rect. 1 19
119 160.17 temperature 25.0 270 < th dose dependent rect. 1 5
129 160.39 temperature 25.0 270 < th dose dependent rect. 24 7
142 161.13 radiation 10.0 90 < th dose dependent rect. 14 1
143 161.19 temperature 20.0 270 < th dose independent rect. 3 2
152 161.37 humidity 80.0 90 < th dose dependent rect. 4 3
165 161.83 temperature 25.0 270 < th dose dependent rect. 3 2
178 162.05 temperature 20.0 270 < th dose independent rect. 1 11
182 162.09 humidity 80.0 10 < th dose independent rect. 2 6
269 163.85 wind 3.0 10 > th dose independent rect. 2 6
272 163.92 humidity 80.0 10 < th dose dependent rect. 4 2
275 163.94 temperature 25.0 90 < th dose dependent sin 3 NA
291 164.24 humidity 50.0 1440 > th dose dependent rect. 5 1
297 164.38 humidity 80.0 10 < th dose independent rect. 4 2
302 164.50 temperature 20.0 270 < th dose independent sin 5 NA
313 164.63 humidity 90.0 1440 < th dose dependent rect. 3 3
314 164.65 humidity 90.0 720 < th dose independent rect. 4 2
370 165.33 atmosphere 1005.0 30 > th dose dependent rect. 15 1
392 165.54 temperature 20.0 270 > th dose independent rect. 1 10
441 165.77 humidity 90.0 1440 < th dose dependent rect. 5 1
511 166.22 wind 1.0 10 > th dose dependent rect. 2 6
578 166.48 temperature 20.0 270 > th dose independent sin 5 NA
625 166.85 humidity 80.0 270 < th dose independent rect. 2 1
628 166.85 humidity 80.0 270 < th dose dependent rect. 2 1
687 167.17 temperature 20.0 270 > th dose independent rect. 23 12
714 167.37 wind 1.0 10 < th dose independent rect. 3 6
726 167.50 temperature 30.0 270 < th dose dependent rect. 12 19
754 167.78 temperature 30.0 90 < th dose dependent rect. 14 18
774 167.93 humidity 90.0 1440 < th dose dependent rect. 23 7
778 167.96 humidity 90.0 1440 > th dose independent rect. 5 1
870 168.47 humidity 80.0 10 < th dose independent rect. 22 10
880 168.51 wind 5.0 90 > th dose independent rect. 5 2
882 168.51 wind 5.0 90 > th dose dependent rect. 5 2
887 168.53 radiation 20.0 90 > th dose independent rect. 6 1
901 168.53 radiation 20.0 90 > th dose dependent rect. 6 1