Os12g0127200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os12g0127200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 262.79 | 0.762 | 9.24 | 1.59 | 0.807 | 2.14 | -0.544 | -1.97 | 0.562 | 11.9 | 19.9 | 2628 | -- | -- |
| 266.43 | 0.76 | 9.17 | 1.88 | 0.812 | 2.66 | -0.569 | -- | 0.642 | 12.1 | 19.57 | 2599 | -- | -- |
| 263.9 | 0.757 | 9.24 | 1.59 | 0.812 | 2.11 | -- | -1.96 | 0.559 | 12 | 20.08 | 2627 | -- | -- |
| 267.04 | 0.761 | 9.17 | 1.88 | 0.821 | 2.65 | -- | -- | 0.651 | 11.9 | 19.5 | 2601 | -- | -- |
| 299.76 | 0.806 | 9.25 | 1.61 | -- | 2.23 | -- | -1.81 | 0.578 | -- | 19.6 | 2897 | -- | -- |
| 393.4 | 0.93 | 9.04 | 3.24 | 0.686 | -- | -0.336 | -- | 1.25 | 11.5 | -- | -- | -- | -- |
| 393.87 | 0.929 | 9.04 | 3.22 | 0.687 | -- | -- | -- | 1.25 | 11.5 | -- | -- | -- | -- |
| 303.07 | 0.811 | 9.19 | 1.76 | -- | 2.67 | -- | -- | 0.611 | -- | 19.62 | 3150 | -- | -- |
| 279.72 | 0.779 | 9.27 | -- | 0.728 | 3.32 | -- | -- | 0.222 | 11.7 | 17.2 | 47296 | -- | -- |
| 423.55 | 0.962 | 9.05 | 3.2 | -- | -- | -- | -- | 1.24 | -- | -- | -- | -- | -- |
| 667.58 | 1.21 | 9.12 | -- | 0.654 | -- | -- | -- | 0.89 | 11.2 | -- | -- | -- | -- |
| 313.31 | 0.824 | 9.28 | -- | -- | 3.29 | -- | -- | 0.225 | -- | 17.18 | 47520 | -- | -- |
| 694.32 | 1.23 | 9.13 | -- | -- | -- | -- | -- | 0.886 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 257.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 6 | 258.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 8 | 259.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 21 | 262.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 26 | 262.65 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 32 | 262.92 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 41 | 263.44 | humidity | 70 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 53 | 264.11 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 54 | 264.17 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 16 |
| 75 | 264.82 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 77 | 264.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 7 |
| 84 | 265.07 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 8 |
| 100 | 265.33 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 117 | 265.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 15 |
| 132 | 265.73 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 151 | 266.17 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 157 | 266.30 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 158 | 266.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 187 | 266.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 188 | 266.65 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 196 | 266.71 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 206 | 266.72 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 12 |
| 209 | 266.74 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 9 |
| 224 | 266.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 243 | 267.04 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 246 | 267.06 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 280 | 267.18 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 284 | 267.20 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 295 | 267.26 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 309 | 267.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 333 | 267.68 | radiation | 1 | 14400 | > th | dose independent | sin | 6 | NA |
| 334 | 267.69 | radiation | 1 | 14400 | < th | dose independent | sin | 6 | NA |
| 446 | 268.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 13 |
| 466 | 268.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 490 | 268.36 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 492 | 268.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 632 | 268.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 644 | 268.77 | humidity | 60 | 43200 | < th | dose dependent | sin | 9 | NA |
| 660 | 268.85 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 752 | 269.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 755 | 269.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 756 | 269.38 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 769 | 269.49 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 803 | 269.62 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 857 | 269.80 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 863 | 269.81 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 885 | 269.88 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 920 | 269.97 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 21 |
| 943 | 270.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 962 | 270.06 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 985 | 270.14 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 991 | 270.14 | temperature | 25 | 4320 | < th | dose dependent | rect. | 7 | 23 |