BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0127200 Os12g0127200|AK122005
(275 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27080.1 | chr2:11566383-11567165 FORWARD LENGTH=261 125 3e-29
AT5G21130.1 | chr5:7185968-7186813 FORWARD LENGTH=282 119 2e-27
AT1G65690.1 | chr1:24431642-24432898 REVERSE LENGTH=253 76 2e-14
AT5G36970.1 | chr5:14604367-14605194 REVERSE LENGTH=249 73 2e-13
AT1G54540.1 | chr1:20367702-20368421 REVERSE LENGTH=240 67 1e-11
>AT2G27080.1 | chr2:11566383-11567165 FORWARD LENGTH=261
Length = 260
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 2/221 (0%)
Query: 37 FRGAPPPSPGTYIIQIPKDQVLRVPPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 96
F P P P TY+IQ+PKDQ+ R+PPP+
Sbjct: 26 FPKKPAPPPSTYVIQVPKDQIYRIPPPENAHRFEQLSRKKTNRSNCRCCFCSFLAAVFIL 85
Query: 97 XXXXXXXXXXXXXXXRPLAPSFSVASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGI 156
RP AP +S+ S+ G++ + S ++P + VR+ NG N K G+
Sbjct: 86 IVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNG-NGKIGV 144
Query: 157 DYRGGGEVTVSYSGERLAAGPWPAFHQAPRNVTVFSTALAGGGVSLTEEQRKQLAADQAA 216
Y V V Y+ ++ G P F+Q +NVTV L+G + LT RK++ + +
Sbjct: 145 YYEKESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSK 204
Query: 217 GAVPLAVDAIVPVRLRFGKVLRTWTVDVKARCEVTVNKLAA 257
VP + PV+++FG V +TWT+ V C+VTV+KL A
Sbjct: 205 KTVPFKLKIKAPVKIKFGSV-KTWTMIVNVDCDVTVDKLTA 244
>AT5G21130.1 | chr5:7185968-7186813 FORWARD LENGTH=282
Length = 281
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 98/216 (45%), Gaps = 2/216 (0%)
Query: 43 PSPGTYIIQIPKDQVLRVPPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 102
P PGTY+I++PKDQ+ RVPPP+
Sbjct: 53 PPPGTYVIKLPKDQIYRVPPPENAHRYEYLSRRKTNKSCCRRCLCYSLSALLIIIVLAAI 112
Query: 103 XXXXXXXXXRPLAPSFSVASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGG 162
+P P FSV+ +S+ G++ + S +P I +R+ N K G+ Y G
Sbjct: 113 AFGFFYLVYQPHKPQFSVSGVSVTGINLTSSSPFSPVIRIKLRSQN-VKGKLGLIYEKGN 171
Query: 163 EVTVSYSGERLAAGPWPAFHQAPRNVTVFSTALAGGGVSLTEEQRKQLAADQAAGAVPLA 222
E V ++G +L G + AF Q NVTV T L G V L RK+L Q G VP
Sbjct: 172 EADVFFNGTKLGNGEFTAFKQPAGNVTVIVTVLKGSSVKLKSSSRKELTESQKKGKVPFG 231
Query: 223 VDAIVPVRLRFGKVLRTWTVDVKARCEVTVNKLAAA 258
+ PV+ + G V TWT+ + C++TV+KL A+
Sbjct: 232 LRIKAPVKFKVGSV-TTWTMTITVDCKITVDKLTAS 266
>AT1G65690.1 | chr1:24431642-24432898 REVERSE LENGTH=253
Length = 252
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 12/151 (7%)
Query: 112 RPLAPSFSVASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYSGE 171
+P P +S+ L + SSLT + + A N N+K GI Y G ++TV Y
Sbjct: 92 KPKLPDYSIDRLQLTRFALNQDSSLTTAFNVTITAKN-PNEKIGIYYEDGSKITVWYMEH 150
Query: 172 RLAAGPWPAFHQAPRNVTVFSTALAG-----GGVSLTEEQRKQLAADQAAGAVPLAVDAI 226
+L+ G P F+Q N TV + G G+ T E+++ Q G +PL +
Sbjct: 151 QLSNGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQ-----QRTGNIPLRIRVN 205
Query: 227 VPVRLRFGKVLRTWTVDVKARCEVTVNKLAA 257
PVR++FGK L+ + V RC V V+ LA
Sbjct: 206 QPVRVKFGK-LKLFEVRFLVRCGVFVDSLAT 235
>AT5G36970.1 | chr5:14604367-14605194 REVERSE LENGTH=249
Length = 248
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 6/162 (3%)
Query: 112 RPLAPSFSVASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYSGE 171
RP P +++ L + SL+ + + A N N+K GI Y G +++V Y
Sbjct: 88 RPKFPDYNIDRLQLTRFQLNQDLSLSTAFNVTITAKN-PNEKIGIYYEDGSKISVLYMQT 146
Query: 172 RLAAGPWPAFHQAPRNVTVFSTALAGGGVSLTEEQRKQLAADQAAGAVPLAVDAIVPVRL 231
R++ G P F+Q N T+ + G + T + G++PL + PVR+
Sbjct: 147 RISNGSLPKFYQGHENTTIILVEMTGFTQNATSLMTTLQEQQRLTGSIPLRIRVTQPVRI 206
Query: 232 RFGKVLRTWTVDVKARCEVTVNKLAAAPANR----GCMVKVR 269
+ GK L+ V RC V+V+ LAA R C + R
Sbjct: 207 KLGK-LKLMKVRFLVRCGVSVDSLAANSVIRVRSSNCKYRFR 247
>AT1G54540.1 | chr1:20367702-20368421 REVERSE LENGTH=240
Length = 239
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 112 RPLAPSFSVASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYSGE 171
P PS+ V SL + L SL+ + + A N N+K GI Y GG + V Y
Sbjct: 80 HPKLPSYEVNSLRVTNLGINLDLSLSAEFKVEITARN-PNEKIGIYYEKGGHIGVWYDKT 138
Query: 172 RLAAGPWPAFHQAPRNVTVFSTALAGGGVSLTEEQRKQLAADQAAGAVPLAVDAIVPVRL 231
+L GP P F+Q RNVT + AL G L Q G VPL + PV +
Sbjct: 139 KLCEGPIPRFYQGHRNVTKLNVALTGRA-QYGNTVLAALQQQQQTGRVPLDLKVNAPVAI 197
Query: 232 RFGKVLRTWTVDVKARCEVTVNKLAA 257
+ G L+ + + C++ V+ L+
Sbjct: 198 KLGN-LKMKKIRILGSCKLVVDSLST 222
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,492,106
Number of extensions: 164219
Number of successful extensions: 694
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 5
Length of query: 275
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 178
Effective length of database: 8,447,217
Effective search space: 1503604626
Effective search space used: 1503604626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)