BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0127200 Os12g0127200|AK122005
(275 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0127200 Harpin-induced 1 domain containing protein 407 e-114
Os11g0130400 Harpin-induced 1 domain containing protein 371 e-103
Os01g0812100 Harpin-induced 1 domain containing protein 142 2e-34
Os04g0677300 Pyruvate kinase family protein 79 3e-15
Os07g0635100 78 6e-15
Os08g0324200 Harpin-induced 1 domain containing protein 78 9e-15
Os09g0267400 Harpin-induced 1 domain containing protein 76 3e-14
AK072753 74 8e-14
>Os12g0127200 Harpin-induced 1 domain containing protein
Length = 275
Score = 407 bits (1045), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/275 (77%), Positives = 214/275 (77%)
Query: 1 MADRVHXXXXXXXXXXXXXXGHDAAAATETTPLHPSFRGAPPPSPGTYIIQIPKDQVLRV 60
MADRVH GHDAAAATETTPLHPSFRGAPPPSPGTYIIQIPKDQVLRV
Sbjct: 1 MADRVHPMPAPPPPSSSPPPGHDAAAATETTPLHPSFRGAPPPSPGTYIIQIPKDQVLRV 60
Query: 61 PPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLAPSFSV 120
PPPD RPLAPSFSV
Sbjct: 61 PPPDRARRYKKLAARPARRRRLRHACCGAFCGVLLLLLLAAAFVGVVYLVFRPLAPSFSV 120
Query: 121 ASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYSGERLAAGPWPA 180
ASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYSGERLAAGPWPA
Sbjct: 121 ASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYSGERLAAGPWPA 180
Query: 181 FHQAPRNVTVFSTALAGGGVSLTEEQRKQLAADQAAGAVPLAVDAIVPVRLRFGKVLRTW 240
FHQAPRNVTVFSTALAGGGVSLTEEQRKQLAADQAAGAVPLAVDAIVPVRLRFGKVLRTW
Sbjct: 181 FHQAPRNVTVFSTALAGGGVSLTEEQRKQLAADQAAGAVPLAVDAIVPVRLRFGKVLRTW 240
Query: 241 TVDVKARCEVTVNKLAAAPANRGCMVKVRPLWWWW 275
TVDVKARCEVTVNKLAAAPANRGCMVKVRPLWWWW
Sbjct: 241 TVDVKARCEVTVNKLAAAPANRGCMVKVRPLWWWW 275
>Os11g0130400 Harpin-induced 1 domain containing protein
Length = 276
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/277 (72%), Positives = 205/277 (74%), Gaps = 3/277 (1%)
Query: 1 MADRVHXXXXXXXXXXXXXXGHDAAAATETTPLHPSFRGAPPPSPGTYIIQIPKDQVLRV 60
MADRVH H AAAATETTPLHPSFRGA PPSPGTYIIQIPKDQVLRV
Sbjct: 1 MADRVHPMPAPPPPSSSPPLEH-AAAATETTPLHPSFRGARPPSPGTYIIQIPKDQVLRV 59
Query: 61 PPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLAPSFSV 120
PPPD RP APSFSV
Sbjct: 60 PPPDRARRYKKLAARPARRRRLRHACCAAFCAALLLLLLAAAFVGAVYLVFRPRAPSFSV 119
Query: 121 ASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYSGERLAAGPWPA 180
ASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSY+GERLAAGPWPA
Sbjct: 120 ASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYAGERLAAGPWPA 179
Query: 181 FHQAPRNVTVFSTALAGGGVSLTEEQRKQLAADQAAGAVPLAVDAIVPVRLRFGKVLRTW 240
FHQAPRNVTVFSTALAGGGVS EEQRK+LAA+QAAGAVPL V+AIVPVRLRFGKVLRTW
Sbjct: 180 FHQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPLTVEAIVPVRLRFGKVLRTW 239
Query: 241 TVDVKARCEVTVNKLAAA--PANRGCMVKVRPLWWWW 275
TVDVK RCEVTVNKLAAA PANRGC VKVRPLWWWW
Sbjct: 240 TVDVKTRCEVTVNKLAAAAPPANRGCRVKVRPLWWWW 276
>Os01g0812100 Harpin-induced 1 domain containing protein
Length = 312
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 120/248 (48%), Gaps = 17/248 (6%)
Query: 41 PPPSPGTYIIQIPKDQVLRVPPPDXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXX 98
P P PGTY++Q+PKD+V RVPPP+
Sbjct: 65 PAPQPGTYVVQMPKDKVFRVPPPENARLFQHYTRRARRRARCSCARVCSWLLLALVLLAA 124
Query: 99 XXXXXXXXXXXXXRPLAPSFSVASLSIRGLDAL----------AVSSLTPQIDAAVRADN 148
+P P +++ SL++ GL + A S +P+ DA VRADN
Sbjct: 125 ALAASAAVVYLVFKPRQPDYTLLSLAVSGLGGILGNASSTAAPAPVSFSPEFDATVRADN 184
Query: 149 GANKKTGIDYRGGG-EVTVSYSGERLAAGPWPAFHQAPRNVTVFSTALAGGGVSLTEEQR 207
N K G+ Y GGG V VSY G RLA G WPAF+Q PRNVTV G G+ +E
Sbjct: 185 -PNGKIGVHYEGGGSHVAVSYGGVRLADGAWPAFYQGPRNVTVLVATAKGLGIRFSERLL 243
Query: 208 KQLAADQAAGAVPLAVDAIVPVRLRFGKVLRTWTVDVKARCEVTVNKLA--AAPANRGCM 265
+AA +VP VD VPVRL+ G V RTW V V+ RC V V++LA A ++ C
Sbjct: 244 GDIAAAGRLRSVPFDVDVKVPVRLQVGGV-RTWAVPVRVRCAVVVDRLAADAKVVSKSCR 302
Query: 266 VKVRPLWW 273
VK R L+W
Sbjct: 303 VKARFLFW 310
>Os04g0677300 Pyruvate kinase family protein
Length = 255
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Query: 112 RPLAPSFSVASLSIRGLDALAVS-SLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYSG 170
+P P F V L++ D A + +++ + V + N N++ GI Y GGEVT S++G
Sbjct: 96 KPKIPDFHVDRLTVTRFDVNATAATVSDAFEVEVTSTN-PNRRIGI-YYDGGEVTASFNG 153
Query: 171 ERLAAGPWPAFHQAPRNVTVFSTALAGGGVSLTEEQRKQLAADQAAGAVPLAVDAIVPVR 230
L G +PA +Q R+ TV L G L QLA Q AG VPL V A VP+R
Sbjct: 154 TELCRGGFPALYQGHRS-TVRPVILLAGETRLDSAVALQLARQQQAGFVPLTVWARVPIR 212
Query: 231 LRFGKVLRTWTVDVKARCEVTVNKLAAAPANR----GCMVKVR 269
++FG + + W + KA C + V+ L A R C K++
Sbjct: 213 IKFGAI-KLWKMTGKATCNLVVDNLVAGRQIRIRSNSCSFKLK 254
>Os07g0635100
Length = 136
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 1 MADRVHXXXXXXXXXXXXXXGHDAAAATETT---PLHPSFRGAPPPSPGTYIIQIPKDQV 57
MADRVH GHDAA A T PLHPSFRGAPPPSP TYIIQIPKDQV
Sbjct: 1 MADRVHPMPAPPLPSSSPPPGHDAATAAAATGTTPLHPSFRGAPPPSPSTYIIQIPKDQV 60
Query: 58 LRVPPPD 64
LRVPPPD
Sbjct: 61 LRVPPPD 67
>Os08g0324200 Harpin-induced 1 domain containing protein
Length = 242
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 112 RPLAPSFSVASLSIRGLDALAVSSLT--PQIDAAVRADNGANKKTGIDYRGGGEVTVSYS 169
RP APS+SV+ +S+ D ++ S LT ++ A+VRA+N N GI Y G VSY
Sbjct: 82 RPKAPSYSVSDMSVARFD-VSSSDLTVYAKLVASVRAEN-PNDMVGIGYGAGSRAAVSYR 139
Query: 170 GERLAAGPWPAFHQAPRNVTVFSTALAGGGVSLTEEQRKQLAADQAAGAVPLAVDAIVPV 229
G L +G PAF+Q RN TV A+ G + L + AG VPL V PV
Sbjct: 140 GTTLCSGRLPAFYQGHRNTTVVRVAMEGRH-GFGPGLQGALEESEEAGNVPLDVYVSAPV 198
Query: 230 RLRFGKV-LRTWTVDVKARCEVTVNKLA 256
LR G V LR TV+V C + V+ L+
Sbjct: 199 TLRLGDVDLREVTVNV--HCALVVDGLS 224
>Os09g0267400 Harpin-induced 1 domain containing protein
Length = 210
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 112 RPLAPSFSVASLSIRGLDALAVS-SLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYSG 170
+P APS+SV+++S+ D + +L ++ A VRA+N N+ GI Y G VSY G
Sbjct: 50 KPKAPSYSVSNMSVSQFDFNSNDLTLYTKLVATVRAEN-PNEMIGIIYGDGSRTVVSYRG 108
Query: 171 ERLAAGPWPAFHQAPRNVTVFSTALAG------GGVSLTEEQRKQLAADQAAGAVPLAVD 224
L +G P F+Q +NVTV ++ G G S EE K+ G VPL V
Sbjct: 109 TPLCSGHLPTFYQGFKNVTVMEISMEGRHGFGSGLQSALEESEKE-------GNVPLDVF 161
Query: 225 AIVPVRLRFGKVLRTWTVDVKARCEVTVNKLA 256
VPV LRFG V V C + V+ ++
Sbjct: 162 VSVPVSLRFGS-FDVREVRVNVHCALVVDSIS 192
>AK072753
Length = 182
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 151 NKKTGIDYRGGGEVTVSYSGERLAAGPWPAFHQAPRNVTVFSTALAG----GGVSLTEEQ 206
N + GI Y G ++V Y RLA G PAF+Q RN TV + +AG GG ++ Q
Sbjct: 61 NARIGIYYEAGSSLSVWYDAHRLARGALPAFYQGHRNTTVLAVVMAGQAQLGGAVMSALQ 120
Query: 207 RKQLAADQAAGAVPLAVDAIVPVRLRFGKVLRTWTVDVKARCEVTVNKL 255
Q GAVPL A VPVR+ G LR W V + RC++ V+ L
Sbjct: 121 DA-----QRTGAVPLVFRADVPVRVELGS-LRLWKVTSRVRCDLVVDSL 163
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,379,485
Number of extensions: 349205
Number of successful extensions: 1505
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1498
Number of HSP's successfully gapped: 10
Length of query: 275
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 176
Effective length of database: 11,866,615
Effective search space: 2088524240
Effective search space used: 2088524240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)