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Os04g0677300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pyruvate kinase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.97 (0.0259) R2 : 0.501
β1 : 1.85 (0.0947) R2dD : 0.433 R2D : 0.28
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.679 (0.0552) R2dN8 : 0.222 R2N8 : 0.0678
σ : 0.485
deviance : 107.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
86.2 0.436 8.98 1.88 0.737 0.46 0.464 -0.0727 0.691 16.7 81 34 -- --
86.23 0.432 8.98 1.87 0.738 0.462 0.514 -- 0.691 16.6 81.07 33 -- --
86.65 0.434 8.98 1.88 0.74 0.461 -- -0.207 0.694 16.7 81.05 33 -- --
86.93 0.434 8.98 1.88 0.743 0.463 -- -- 0.693 16.6 81.09 33 -- --
105.24 0.478 8.97 1.86 -- 0.149 -- -0.2 0.695 -- 82.93 37 -- --
97.23 0.462 8.98 1.87 0.435 -- 0.502 -- 0.686 18.9 -- -- -- --
97.87 0.463 8.98 1.86 0.436 -- -- -- 0.687 19 -- -- -- --
105.38 0.478 8.97 1.85 -- 0.15 -- -- 0.677 -- 81.3 33 -- --
176.87 0.619 9.02 -- 0.734 0.489 -- -- 0.5 16.8 83.38 57 -- --
107.88 0.485 8.97 1.85 -- -- -- -- 0.679 -- -- -- -- --
188.96 0.643 9.02 -- 0.417 -- -- -- 0.48 19.3 -- -- -- --
194.89 0.65 9.01 -- -- 0.177 -- -- 0.477 -- 83 56 -- --
198.2 0.657 9.01 -- -- -- -- -- 0.473 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.31 temperature 10.0 90 > th dose dependent rect. 7 22
16 82.24 humidity 80.0 30 > th dose independent rect. 5 15
17 82.32 temperature 30.0 30 < th dose dependent rect. 5 15
18 82.38 radiation 10.0 14400 < th dose independent rect. 17 1
19 82.39 radiation 10.0 14400 < th dose independent rect. 17 4
23 82.43 radiation 10.0 14400 < th dose independent rect. 17 7
32 82.70 temperature 30.0 30 < th dose dependent rect. 5 13
33 82.75 radiation 10.0 14400 > th dose dependent rect. 17 13
34 82.87 humidity 70.0 90 > th dose dependent rect. 5 14
35 82.97 radiation 10.0 14400 > th dose dependent rect. 17 1
48 83.10 temperature 15.0 10 > th dose dependent rect. 8 14
54 83.21 humidity 70.0 14400 < th dose independent rect. 19 12
56 83.27 humidity 70.0 14400 < th dose independent rect. 19 3
65 83.27 radiation 20.0 90 < th dose dependent rect. 5 12
69 83.37 humidity 70.0 14400 > th dose independent rect. 19 12
70 83.38 humidity 70.0 14400 > th dose independent rect. 19 3
71 83.38 humidity 70.0 14400 < th dose dependent rect. 18 3
72 83.40 humidity 70.0 14400 > th dose independent rect. 19 5
104 83.66 humidity 80.0 30 > th dose independent rect. 5 13
114 83.81 wind 9.0 43200 < th dose independent rect. 20 9
118 83.93 wind 5.0 43200 > th dose independent rect. 6 2
125 84.00 wind 5.0 43200 < th dose independent rect. 6 2
130 84.07 temperature 30.0 720 < th dose independent rect. 17 14
134 84.09 temperature 15.0 10 > th dose dependent rect. 8 18
135 84.11 wind 3.0 43200 > th dose dependent rect. 7 1
136 84.12 humidity 50.0 14400 > th dose independent rect. 5 4
137 84.13 humidity 60.0 43200 > th dose independent rect. 15 2
167 84.34 wind 9.0 43200 > th dose independent rect. 20 9
169 84.37 humidity 70.0 90 > th dose dependent rect. 4 23
172 84.39 radiation 30.0 14400 < th dose independent rect. 5 3
178 84.42 humidity 60.0 43200 > th dose independent rect. 14 20
181 84.44 radiation 20.0 14400 > th dose dependent rect. 16 15
193 84.51 humidity 60.0 43200 > th dose independent rect. 15 9
210 84.55 radiation 30.0 14400 < th dose independent rect. 17 15
212 84.55 humidity 70.0 90 > th dose independent rect. 13 19
218 84.56 humidity 60.0 43200 > th dose independent rect. 15 18
219 84.56 radiation 30.0 4320 > th dose dependent rect. 15 17
228 84.58 temperature 10.0 270 > th dose dependent rect. 7 15
230 84.59 temperature 30.0 30 < th dose dependent rect. 5 11
254 84.64 radiation 30.0 14400 < th dose independent rect. 23 9
260 84.67 radiation 30.0 14400 < th dose independent rect. 20 12
264 84.69 radiation 30.0 1440 < th dose independent rect. 16 16
272 84.71 humidity 60.0 43200 < th dose independent rect. 14 20
288 84.75 humidity 60.0 43200 < th dose independent rect. 15 1
294 84.77 wind 9.0 43200 > th dose independent rect. 20 4
300 84.79 precipitation 0.1 90 < th dose independent rect. 7 22
302 84.79 precipitation 0.1 90 < th dose dependent rect. 7 22
303 84.80 wind 7.0 43200 > th dose dependent rect. 20 8
304 84.80 wind 3.0 43200 > th dose dependent rect. 18 15
308 84.82 temperature 30.0 720 < th dose independent rect. 17 6
328 84.91 wind 1.0 90 > th dose independent rect. 4 4
331 84.91 humidity 50.0 720 > th dose dependent rect. 19 4
359 84.97 wind 5.0 43200 < th dose independent rect. 18 16
360 84.97 temperature 30.0 90 < th dose dependent rect. 5 2
367 84.98 wind 5.0 43200 > th dose independent rect. 18 16
372 84.99 wind 3.0 43200 > th dose dependent sin 10 NA
373 84.99 wind 7.0 43200 > th dose dependent rect. 20 5
388 85.05 humidity 60.0 43200 < th dose independent rect. 14 13
392 85.06 humidity 60.0 43200 < th dose independent rect. 14 10
402 85.07 humidity 70.0 720 > th dose independent rect. 18 5
410 85.08 wind 3.0 43200 > th dose independent rect. 4 1
418 85.09 radiation 30.0 14400 > th dose dependent rect. 7 1
440 85.10 wind 1.0 43200 > th dose dependent rect. 24 9
450 85.12 radiation 30.0 1440 < th dose independent rect. 5 3
460 85.13 wind 5.0 43200 < th dose dependent rect. 2 2
461 85.13 wind 5.0 43200 < th dose dependent rect. 24 5
467 85.15 humidity 70.0 720 > th dose independent rect. 18 13
472 85.15 humidity 80.0 30 > th dose independent rect. 21 23
488 85.16 humidity 50.0 90 > th dose dependent rect. 13 19
489 85.17 wind 3.0 43200 < th dose independent rect. 4 1
497 85.17 radiation 40.0 270 < th dose dependent rect. 10 21
504 85.18 radiation 40.0 1440 < th dose dependent rect. 17 4
552 85.22 wind 9.0 43200 < th dose dependent rect. 24 9
560 85.23 wind 5.0 43200 < th dose independent sin 10 NA
561 85.23 wind 1.0 270 > th dose independent rect. 4 1
566 85.23 wind 1.0 43200 > th dose dependent rect. 24 5
578 85.24 radiation 40.0 270 < th dose independent rect. 10 21
592 85.26 radiation 10.0 90 < th dose independent rect. 5 12
597 85.27 atmosphere 1015.0 90 < th dose independent rect. 7 22
604 85.28 wind 5.0 43200 > th dose independent sin 10 NA
636 85.32 temperature 25.0 4320 > th dose independent rect. 4 2
637 85.32 precipitation 0.1 43200 > th dose independent rect. 16 2
668 85.35 precipitation 0.1 43200 > th dose dependent rect. 14 4
676 85.35 humidity 70.0 10 > th dose dependent rect. 5 23
677 85.36 radiation 40.0 1440 < th dose dependent rect. 17 2
687 85.37 precipitation 0.1 43200 < th dose independent rect. 16 2
689 85.37 precipitation 0.1 43200 < th dose dependent rect. 16 2
690 85.37 wind 7.0 43200 < th dose dependent rect. 2 6
698 85.38 radiation 10.0 14400 < th dose independent sin 14 NA
701 85.38 radiation 10.0 14400 > th dose independent rect. 17 13
724 85.39 precipitation 0.1 43200 > th dose dependent rect. 11 7
736 85.40 humidity 80.0 30 > th dose independent rect. 5 22
749 85.41 precipitation 0.1 43200 > th dose independent rect. 14 4
752 85.41 wind 9.0 43200 < th dose dependent rect. 7 1
753 85.41 wind 1.0 43200 > th dose dependent rect. 2 2
770 85.43 precipitation 0.1 43200 < th dose independent rect. 14 4
778 85.43 precipitation 0.1 43200 < th dose dependent rect. 14 4
823 85.47 radiation 10.0 14400 > th dose independent rect. 15 1
824 85.47 radiation 10.0 14400 > th dose independent rect. 17 1
854 85.48 radiation 40.0 1440 < th dose dependent rect. 17 7
874 85.50 radiation 10.0 30 > th dose independent rect. 8 7
898 85.52 radiation 10.0 14400 > th dose independent rect. 15 3
920 85.53 humidity 60.0 43200 > th dose independent sin 13 NA
922 85.53 radiation 30.0 14400 > th dose independent rect. 7 1