BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0677300 Os04g0677300|AK108084
(255 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0677300 Pyruvate kinase family protein 395 e-110
AK072753 114 9e-26
Os08g0324200 Harpin-induced 1 domain containing protein 96 2e-20
Os09g0267400 Harpin-induced 1 domain containing protein 92 3e-19
Os01g0812100 Harpin-induced 1 domain containing protein 84 1e-16
Os02g0507900 Harpin-induced 1 domain containing protein 82 5e-16
Os12g0127200 Harpin-induced 1 domain containing protein 79 5e-15
Os11g0130400 Harpin-induced 1 domain containing protein 77 9e-15
>Os04g0677300 Pyruvate kinase family protein
Length = 255
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/255 (78%), Positives = 199/255 (78%)
Query: 1 MDYHRIHPVGVGSPAPAPDSQQQVGKGRSTASYGEKEQLPITXXXXXXXXXXXXXXXXXX 60
MDYHRIHPVGVGSPAPAPDSQQQVGKGRSTASYGEKEQLPIT
Sbjct: 1 MDYHRIHPVGVGSPAPAPDSQQQVGKGRSTASYGEKEQLPITAPRPYAPAPLPPPPPRRR 60
Query: 61 XXXXXXXXXVCWXXXXXXXXXXXXXXXXXILYAVFKPKIPDFHVDRLTVTRFDVNATAAT 120
VCW ILYAVFKPKIPDFHVDRLTVTRFDVNATAAT
Sbjct: 61 SRGRRCCRCVCWTLLAVLVLAVALGATAGILYAVFKPKIPDFHVDRLTVTRFDVNATAAT 120
Query: 121 VSDAFEVEVTSTNPNRRIGIYYDGGEVTASFNGTELCRGGFPALYQGHRSTVRPVILLAG 180
VSDAFEVEVTSTNPNRRIGIYYDGGEVTASFNGTELCRGGFPALYQGHRSTVRPVILLAG
Sbjct: 121 VSDAFEVEVTSTNPNRRIGIYYDGGEVTASFNGTELCRGGFPALYQGHRSTVRPVILLAG 180
Query: 181 ETRLDSXXXXXXXXXXXXGFVPLTVWARVPIRIKFGAIKLWKMTGKATCNLVVDNLVAGR 240
ETRLDS GFVPLTVWARVPIRIKFGAIKLWKMTGKATCNLVVDNLVAGR
Sbjct: 181 ETRLDSAVALQLARQQQAGFVPLTVWARVPIRIKFGAIKLWKMTGKATCNLVVDNLVAGR 240
Query: 241 QIRIRSNSCSFKLKV 255
QIRIRSNSCSFKLKV
Sbjct: 241 QIRIRSNSCSFKLKV 255
>AK072753
Length = 182
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 26/166 (15%)
Query: 91 LYAVFKPKIPDFHVDRLTVTRFDVNATAATVSDAFEVEVTSTNPNRRIGIYYDGGE-VTA 149
LY VF PK P + VT+TNPN RIGIYY+ G ++
Sbjct: 42 LYLVFDPKAPRY-------------------------SVTATNPNARIGIYYEAGSSLSV 76
Query: 150 SFNGTELCRGGFPALYQGHRSTVRPVILLAGETRLDSXXXXXXXXXXXXGFVPLTVWARV 209
++ L RG PA YQGHR+T +++AG+ +L G VPL A V
Sbjct: 77 WYDAHRLARGALPAFYQGHRNTTVLAVVMAGQAQLGGAVMSALQDAQRTGAVPLVFRADV 136
Query: 210 PIRIKFGAIKLWKMTGKATCNLVVDNLVAGRQIRIRSNSCSFKLKV 255
P+R++ G+++LWK+T + C+LVVD+L + I++++C F LK+
Sbjct: 137 PVRVELGSLRLWKVTSRVRCDLVVDSLGVNNPVNIKASNCKFSLKL 182
>Os08g0324200 Harpin-induced 1 domain containing protein
Length = 242
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 90 ILYAVFKPKIPDFHVDRLTVTRFDVNATAATVSDAFEVEVTSTNPNRRIGIYYDGGEVTA 149
+LYA +PK P + V ++V RFDV+++ TV V + NPN +GI Y G A
Sbjct: 77 LLYAC-RPKAPSYSVSDMSVARFDVSSSDLTVYAKLVASVRAENPNDMVGIGYGAGSRAA 135
Query: 150 -SFNGTELCRGGFPALYQGHRSTVRPVILLAGETRLDSXXXXXXXXXXXXGFVPLTVWAR 208
S+ GT LC G PA YQGHR+T + + G G VPL V+
Sbjct: 136 VSYRGTTLCSGRLPAFYQGHRNTTVVRVAMEGRHGFGPGLQGALEESEEAGNVPLDVYVS 195
Query: 209 VPIRIKFGAIKLWKMTGKATCNLVVDNLVAGRQIRIRS 246
P+ ++ G + L ++T C LVVD L ++ I+S
Sbjct: 196 APVTLRLGDVDLREVTVNVHCALVVDGLSPKKKPAIKS 233
>Os09g0267400 Harpin-induced 1 domain containing protein
Length = 210
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 95 FKPKIPDFHVDRLTVTRFDVNATAATVSDAFEVEVTSTNPNRRIGIYY-DGGEVTASFNG 153
+KPK P + V ++V++FD N+ T+ V + NPN IGI Y DG S+ G
Sbjct: 49 YKPKAPSYSVSNMSVSQFDFNSNDLTLYTKLVATVRAENPNEMIGIIYGDGSRTVVSYRG 108
Query: 154 TELCRGGFPALYQGHRSTVRPVILLAGETRLDSXXXXXXXXXXXXGFVPLTVWARVPIRI 213
T LC G P YQG ++ I + G S G VPL V+ VP+ +
Sbjct: 109 TPLCSGHLPTFYQGFKNVTVMEISMEGRHGFGSGLQSALEESEKEGNVPLDVFVSVPVSL 168
Query: 214 KFGAIKLWKMTGKATCNLVVDNLVAGRQIRIRS 246
+FG+ + ++ C LVVD++ ++ I+S
Sbjct: 169 RFGSFDVREVRVNVHCALVVDSISPKKKPTIKS 201
>Os01g0812100 Harpin-induced 1 domain containing protein
Length = 312
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 92 YAVFKPKIPDFHVDRLTVTRF-----DVNATAA----TVSDAFEVEVTSTNPNRRIGIYY 142
Y VFKP+ PD+ + L V+ + ++TAA + S F+ V + NPN +IG++Y
Sbjct: 134 YLVFKPRQPDYTLLSLAVSGLGGILGNASSTAAPAPVSFSPEFDATVRADNPNGKIGVHY 193
Query: 143 DGG--EVTASFNGTELCRGGFPALYQGHRSTVRPVILLAG-ETRLDSXXXXXXXXXXXXG 199
+GG V S+ G L G +PA YQG R+ V G R
Sbjct: 194 EGGGSHVAVSYGGVRLADGAWPAFYQGPRNVTVLVATAKGLGIRFSERLLGDIAAAGRLR 253
Query: 200 FVPLTVWARVPIRIKFGAIKLWKMTGKATCNLVVDNLVAGRQIRIRSNSCSFKLK 254
VP V +VP+R++ G ++ W + + C +VVD L A ++ S SC K +
Sbjct: 254 SVPFDVDVKVPVRLQVGGVRTWAVPVRVRCAVVVDRLAA--DAKVVSKSCRVKAR 306
>Os02g0507900 Harpin-induced 1 domain containing protein
Length = 250
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 97 PKIPDFHVDRLTVTRFDVNATAA-----------TVSDAFEVEVTSTNPNRRIGIYYDGG 145
P++P + ++ LTV FD++ T +F+ V NPNR I I Y+ G
Sbjct: 79 PRLPRYAIESLTVQAFDMDYDGHGGEYGYGDPQLTARASFDAAVRFENPNRAIDISYEEG 138
Query: 146 EVTASF-NGTELCRGGFPALYQGHRSTVRPVILLAGETRLDSXXXXXXXXXXXXG---FV 201
A F G L G PA YQGH V + G+ L+ G +
Sbjct: 139 SSLAVFYGGHRLSEGALPAFYQGH-GDAGVVHVAMGDATLEGAGAVAEAMQQVVGGGGEL 197
Query: 202 PLTVWARVPIRIKFGAIKLWKMTGKATCNLVVDNLVAGRQIRIRSNSCSFKL 253
PL VP+R+K G I K+T C+LV+D L +IR+++ SC KL
Sbjct: 198 PLVFRGEVPVRVKVGPITTGKLTPTIRCDLVLDRLSTEGEIRVKNMSCKIKL 249
>Os12g0127200 Harpin-induced 1 domain containing protein
Length = 275
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 90 ILYAVFKPKIPDFHVDRLTVTRFDVNATAATVSDAFEVEVTSTN-PNRRIGI-YYDGGEV 147
++Y VF+P P F V L++ D A + +++ + V + N N++ GI Y GGEV
Sbjct: 106 VVYLVFRPLAPSFSVASLSIRGLDALAVS-SLTPQIDAAVRADNGANKKTGIDYRGGGEV 164
Query: 148 TASFNGTELCRGGFPALYQGHRS-TVRPVILLAGETRLDSXXXXXXXXXXXXGFVPLTVW 206
T S++G L G +PA +Q R+ TV L G L G VPL V
Sbjct: 165 TVSYSGERLAAGPWPAFHQAPRNVTVFSTALAGGGVSLTEEQRKQLAADQAAGAVPLAVD 224
Query: 207 ARVPIRIKFGAI-KLWKMTGKATCNLVVDNLVAG 239
A VP+R++FG + + W + KA C + V+ L A
Sbjct: 225 AIVPVRLRFGKVLRTWTVDVKARCEVTVNKLAAA 258
>Os11g0130400 Harpin-induced 1 domain containing protein
Length = 276
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 5/153 (3%)
Query: 91 LYAVFKPKIPDFHVDRLTVTRFDVNATAATVSDAFEVEVTSTN-PNRRIGI-YYDGGEVT 148
+Y VF+P+ P F V L++ D A ++++ + V + N N++ GI Y GGEVT
Sbjct: 106 VYLVFRPRAPSFSVASLSIRGLDALAV-SSLTPQIDAAVRADNGANKKTGIDYRGGGEVT 164
Query: 149 ASFNGTELCRGGFPALYQGHRS-TVRPVILLAGETRLDSXXXXXXXXXXXXGFVPLTVWA 207
S+ G L G +PA +Q R+ TV L G G VPLTV A
Sbjct: 165 VSYAGERLAAGPWPAFHQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPLTVEA 224
Query: 208 RVPIRIKFGAI-KLWKMTGKATCNLVVDNLVAG 239
VP+R++FG + + W + K C + V+ L A
Sbjct: 225 IVPVRLRFGKVLRTWTVDVKTRCEVTVNKLAAA 257
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,939,682
Number of extensions: 237592
Number of successful extensions: 647
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 8
Length of query: 255
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 156
Effective length of database: 11,866,615
Effective search space: 1851191940
Effective search space used: 1851191940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)