Os11g0130400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os11g0130400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 237.1 | 0.723 | 9.03 | 1.03 | 0.417 | 2.07 | -0.183 | -2.11 | 0.289 | 10.7 | 20.7 | 2534 | -- | -- |
| 243.64 | 0.727 | 8.95 | 1.36 | 0.417 | 2.5 | -0.0798 | -- | 0.404 | 10.6 | 20 | 2535 | -- | -- |
| 237.22 | 0.717 | 9.03 | 1.03 | 0.416 | 2.07 | -- | -2.08 | 0.289 | 10.8 | 20.69 | 2533 | -- | -- |
| 242.38 | 0.725 | 8.95 | 1.36 | 0.422 | 2.61 | -- | -- | 0.42 | 10.9 | 19.6 | 2543 | -- | -- |
| 247.4 | 0.733 | 9.04 | 0.987 | -- | 2.04 | -- | -2.08 | 0.293 | -- | 20.51 | 2630 | -- | -- |
| 372.59 | 0.905 | 8.82 | 2.7 | 0.241 | -- | -1.13 | -- | 1.02 | 6.82 | -- | -- | -- | -- |
| 373.5 | 0.905 | 8.81 | 2.69 | 0.301 | -- | -- | -- | 1.03 | 9.52 | -- | -- | -- | -- |
| 252.41 | 0.74 | 8.95 | 1.35 | -- | 2.63 | -- | -- | 0.434 | -- | 19.51 | 2610 | -- | -- |
| 272.45 | 0.769 | 8.98 | -- | 0.238 | 3.43 | -- | -- | 0.3 | 10.6 | 19.5 | 8199 | -- | -- |
| 378.81 | 0.909 | 8.82 | 2.69 | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
| 564.13 | 1.11 | 8.88 | -- | 0.302 | -- | -- | -- | 0.727 | 8.84 | -- | -- | -- | -- |
| 271.92 | 0.768 | 8.99 | -- | -- | 3.54 | -- | -- | 0.214 | -- | 18.8 | 8179 | -- | -- |
| 569.31 | 1.11 | 8.89 | -- | -- | -- | -- | -- | 0.729 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 234.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 6 | 236.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 45 | 243.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 14 |
| 48 | 243.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 52 | 244.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 56 | 244.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 60 | 244.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 72 | 244.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 87 | 244.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 99 | 245.21 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 100 | 245.21 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 117 | 245.40 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 158 | 245.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 7 |
| 247 | 247.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 263 | 247.24 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 279 | 247.44 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 286 | 247.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 331 | 247.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 366 | 248.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 416 | 248.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 538 | 249.04 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 609 | 249.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 748 | 250.40 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 765 | 250.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 835 | 251.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 999 | 252.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |