BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0130400 Os11g0130400|J100075B21
(276 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27080.1 | chr2:11566383-11567165 FORWARD LENGTH=261 131 3e-31
AT5G21130.1 | chr5:7185968-7186813 FORWARD LENGTH=282 130 5e-31
AT1G65690.1 | chr1:24431642-24432898 REVERSE LENGTH=253 91 9e-19
AT5G36970.1 | chr5:14604367-14605194 REVERSE LENGTH=249 87 9e-18
AT1G54540.1 | chr1:20367702-20368421 REVERSE LENGTH=240 77 1e-14
>AT2G27080.1 | chr2:11566383-11567165 FORWARD LENGTH=261
Length = 260
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 3/232 (1%)
Query: 42 PSPGTYIIQIPKDQVLRVPPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 101
P P TY+IQ+PKDQ+ R+PPP+
Sbjct: 32 PPPSTYVIQVPKDQIYRIPPPENAHRFEQLSRKKTNRSNCRCCFCSFLAAVFILIVLAGI 91
Query: 102 FVGAVYLVFRPRAPSFSVASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGG 161
+YL++RP AP +S+ S+ G++ + S ++P + VR+ NG N K G+ Y
Sbjct: 92 SFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNG-NGKIGVYYEKES 150
Query: 162 EVTVSYAGERLAAGPWPAFHQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPLT 221
V V Y ++ G P F+Q +NVTV L+G + RK + E + VP
Sbjct: 151 SVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFK 210
Query: 222 VEAIVPVRLRFGKVLRTWTVDVKTRCEVTVNKLAAAAPPANRGCRVKVRPLW 273
++ PV+++FG V +TWT+ V C+VTV+KL A + +R C V LW
Sbjct: 211 LKIKAPVKIKFGSV-KTWTMIVNVDCDVTVDKLTAPSRIVSRKCSHDVD-LW 260
>AT5G21130.1 | chr5:7185968-7186813 FORWARD LENGTH=282
Length = 281
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 102/225 (45%), Gaps = 2/225 (0%)
Query: 42 PSPGTYIIQIPKDQVLRVPPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 101
P PGTY+I++PKDQ+ RVPPP+
Sbjct: 53 PPPGTYVIKLPKDQIYRVPPPENAHRYEYLSRRKTNKSCCRRCLCYSLSALLIIIVLAAI 112
Query: 102 FVGAVYLVFRPRAPSFSVASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGG 161
G YLV++P P FSV+ +S+ G++ + S +P I +R+ N K G+ Y G
Sbjct: 113 AFGFFYLVYQPHKPQFSVSGVSVTGINLTSSSPFSPVIRIKLRSQN-VKGKLGLIYEKGN 171
Query: 162 EVTVSYAGERLAAGPWPAFHQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPLT 221
E V + G +L G + AF Q NVTV T L G V RK L Q G VP
Sbjct: 172 EADVFFNGTKLGNGEFTAFKQPAGNVTVIVTVLKGSSVKLKSSSRKELTESQKKGKVPFG 231
Query: 222 VEAIVPVRLRFGKVLRTWTVDVKTRCEVTVNKLAAAAPPANRGCR 266
+ PV+ + G V TWT+ + C++TV+KL A+A C
Sbjct: 232 LRIKAPVKFKVGSV-TTWTMTITVDCKITVDKLTASATVKTENCE 275
>AT1G65690.1 | chr1:24431642-24432898 REVERSE LENGTH=253
Length = 252
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 103 VGAVYLVFRPRAPSFSVASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGE 162
+G +YLVF+P+ P +S+ L + SSLT + + A N N+K GI Y G +
Sbjct: 84 IGILYLVFKPKLPDYSIDRLQLTRFALNQDSSLTTAFNVTITAKN-PNEKIGIYYEDGSK 142
Query: 163 VTVSYAGERLAAGPWPAFHQAPRNVTVFSTALAG------GGVSFPEEQRKRLAAEQAAG 216
+TV Y +L+ G P F+Q N TV + G G + EEQ++R G
Sbjct: 143 ITVWYMEHQLSNGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQR------TG 196
Query: 217 AVPLTVEAIVPVRLRFGKVLRTWTVDVKTRCEVTVNKLAA--AAPPANRGCRVKVR 270
+PL + PVR++FGK L+ + V RC V V+ LA + C+ ++R
Sbjct: 197 NIPLRIRVNQPVRVKFGK-LKLFEVRFLVRCGVFVDSLATNNVIKIQSSSCKFRLR 251
>AT5G36970.1 | chr5:14604367-14605194 REVERSE LENGTH=249
Length = 248
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 2/169 (1%)
Query: 102 FVGAVYLVFRPRAPSFSVASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGG 161
VG +YLVFRP+ P +++ L + SL+ + + A N N+K GI Y G
Sbjct: 79 IVGILYLVFRPKFPDYNIDRLQLTRFQLNQDLSLSTAFNVTITAKN-PNEKIGIYYEDGS 137
Query: 162 EVTVSYAGERLAAGPWPAFHQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPLT 221
+++V Y R++ G P F+Q N T+ + G + ++ G++PL
Sbjct: 138 KISVLYMQTRISNGSLPKFYQGHENTTIILVEMTGFTQNATSLMTTLQEQQRLTGSIPLR 197
Query: 222 VEAIVPVRLRFGKVLRTWTVDVKTRCEVTVNKLAAAAPPANRGCRVKVR 270
+ PVR++ GK L+ V RC V+V+ LAA + R K R
Sbjct: 198 IRVTQPVRIKLGK-LKLMKVRFLVRCGVSVDSLAANSVIRVRSSNCKYR 245
>AT1G54540.1 | chr1:20367702-20368421 REVERSE LENGTH=240
Length = 239
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 107 YLVFRPRAPSFSVASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVS 166
Y VF P+ PS+ V SL + L SL+ + + A N N+K GI Y GG + V
Sbjct: 76 YFVFHPKLPSYEVNSLRVTNLGINLDLSLSAEFKVEITARN-PNEKIGIYYEKGGHIGVW 134
Query: 167 YAGERLAAGPWPAFHQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPLTVEAIV 226
Y +L GP P F+Q RNVT + AL G + L +Q G VPL ++
Sbjct: 135 YDKTKLCEGPIPRFYQGHRNVTKLNVALTGRA-QYGNTVLAALQQQQQTGRVPLDLKVNA 193
Query: 227 PVRLRFGKVLRTWTVDVKTRCEVTVNKLAA 256
PV ++ G L+ + + C++ V+ L+
Sbjct: 194 PVAIKLGN-LKMKKIRILGSCKLVVDSLST 222
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,632,641
Number of extensions: 163599
Number of successful extensions: 580
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 5
Length of query: 276
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 179
Effective length of database: 8,447,217
Effective search space: 1512051843
Effective search space used: 1512051843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)