BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0130400 Os11g0130400|J100075B21
(276 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0130400 Harpin-induced 1 domain containing protein 414 e-116
Os12g0127200 Harpin-induced 1 domain containing protein 379 e-105
Os01g0812100 Harpin-induced 1 domain containing protein 160 1e-39
Os08g0324200 Harpin-induced 1 domain containing protein 86 2e-17
Os04g0677300 Pyruvate kinase family protein 86 3e-17
Os09g0267400 Harpin-induced 1 domain containing protein 81 1e-15
AK072753 80 1e-15
Os07g0635100 67 1e-11
>Os11g0130400 Harpin-induced 1 domain containing protein
Length = 276
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/276 (78%), Positives = 218/276 (78%)
Query: 1 MADRVHXXXXXXXXXXXXXXXXXXXXTETTPLHPSFRGARPPSPGTYIIQIPKDQVLRVP 60
MADRVH TETTPLHPSFRGARPPSPGTYIIQIPKDQVLRVP
Sbjct: 1 MADRVHPMPAPPPPSSSPPLEHAAAATETTPLHPSFRGARPPSPGTYIIQIPKDQVLRVP 60
Query: 61 PPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGAVYLVFRPRAPSFSVA 120
PPD FVGAVYLVFRPRAPSFSVA
Sbjct: 61 PPDRARRYKKLAARPARRRRLRHACCAAFCAALLLLLLAAAFVGAVYLVFRPRAPSFSVA 120
Query: 121 SLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYAGERLAAGPWPAF 180
SLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYAGERLAAGPWPAF
Sbjct: 121 SLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYAGERLAAGPWPAF 180
Query: 181 HQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPLTVEAIVPVRLRFGKVLRTWT 240
HQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPLTVEAIVPVRLRFGKVLRTWT
Sbjct: 181 HQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPLTVEAIVPVRLRFGKVLRTWT 240
Query: 241 VDVKTRCEVTVNKLAAAAPPANRGCRVKVRPLWWWW 276
VDVKTRCEVTVNKLAAAAPPANRGCRVKVRPLWWWW
Sbjct: 241 VDVKTRCEVTVNKLAAAAPPANRGCRVKVRPLWWWW 276
>Os12g0127200 Harpin-induced 1 domain containing protein
Length = 275
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/277 (73%), Positives = 208/277 (75%), Gaps = 3/277 (1%)
Query: 1 MADRVHXXXXXXXXXXXXXX-XXXXXXTETTPLHPSFRGARPPSPGTYIIQIPKDQVLRV 59
MADRVH TETTPLHPSFRGA PPSPGTYIIQIPKDQVLRV
Sbjct: 1 MADRVHPMPAPPPPSSSPPPGHDAAAATETTPLHPSFRGAPPPSPGTYIIQIPKDQVLRV 60
Query: 60 PPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGAVYLVFRPRAPSFSV 119
PPPD FVG VYLVFRP APSFSV
Sbjct: 61 PPPDRARRYKKLAARPARRRRLRHACCGAFCGVLLLLLLAAAFVGVVYLVFRPLAPSFSV 120
Query: 120 ASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYAGERLAAGPWPA 179
ASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSY+GERLAAGPWPA
Sbjct: 121 ASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYSGERLAAGPWPA 180
Query: 180 FHQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPLTVEAIVPVRLRFGKVLRTW 239
FHQAPRNVTVFSTALAGGGVS EEQRK+LAA+QAAGAVPL V+AIVPVRLRFGKVLRTW
Sbjct: 181 FHQAPRNVTVFSTALAGGGVSLTEEQRKQLAADQAAGAVPLAVDAIVPVRLRFGKVLRTW 240
Query: 240 TVDVKTRCEVTVNKLAAAAPPANRGCRVKVRPLWWWW 276
TVDVK RCEVTVNKLAAA PANRGC VKVRPLWWWW
Sbjct: 241 TVDVKARCEVTVNKLAAA--PANRGCMVKVRPLWWWW 275
>Os01g0812100 Harpin-induced 1 domain containing protein
Length = 312
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 127/246 (51%), Gaps = 15/246 (6%)
Query: 42 PSPGTYIIQIPKDQVLRVPPPDXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXX 99
P PGTY++Q+PKD+V RVPPP+
Sbjct: 67 PQPGTYVVQMPKDKVFRVPPPENARLFQHYTRRARRRARCSCARVCSWLLLALVLLAAAL 126
Query: 100 XXFVGAVYLVFRPRAPSFSVASLSIRGLDAL----------AVSSLTPQIDAAVRADNGA 149
VYLVF+PR P +++ SL++ GL + A S +P+ DA VRADN
Sbjct: 127 AASAAVVYLVFKPRQPDYTLLSLAVSGLGGILGNASSTAAPAPVSFSPEFDATVRADN-P 185
Query: 150 NKKTGIDYRGGG-EVTVSYAGERLAAGPWPAFHQAPRNVTVFSTALAGGGVSFPEEQRKR 208
N K G+ Y GGG V VSY G RLA G WPAF+Q PRNVTV G G+ F E
Sbjct: 186 NGKIGVHYEGGGSHVAVSYGGVRLADGAWPAFYQGPRNVTVLVATAKGLGIRFSERLLGD 245
Query: 209 LAAEQAAGAVPLTVEAIVPVRLRFGKVLRTWTVDVKTRCEVTVNKLAAAAPPANRGCRVK 268
+AA +VP V+ VPVRL+ G V RTW V V+ RC V V++LAA A ++ CRVK
Sbjct: 246 IAAAGRLRSVPFDVDVKVPVRLQVGGV-RTWAVPVRVRCAVVVDRLAADAKVVSKSCRVK 304
Query: 269 VRPLWW 274
R L+W
Sbjct: 305 ARFLFW 310
>Os08g0324200 Harpin-induced 1 domain containing protein
Length = 242
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 90/170 (52%), Gaps = 10/170 (5%)
Query: 105 AVYLVF--RPRAPSFSVASLSIRGLDALAVSSLT--PQIDAAVRADNGANKKTGIDYRGG 160
+ YL++ RP+APS+SV+ +S+ D ++ S LT ++ A+VRA+N N GI Y G
Sbjct: 74 SAYLLYACRPKAPSYSVSDMSVARFD-VSSSDLTVYAKLVASVRAEN-PNDMVGIGYGAG 131
Query: 161 GEVTVSYAGERLAAGPWPAFHQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPL 220
VSY G L +G PAF+Q RN TV A+ G F + L + AG VPL
Sbjct: 132 SRAAVSYRGTTLCSGRLPAFYQGHRNTTVVRVAMEGRH-GFGPGLQGALEESEEAGNVPL 190
Query: 221 TVEAIVPVRLRFGKV-LRTWTVDVKTRCEVTVNKLAAAAPPANRGCRVKV 269
V PV LR G V LR TV+V C + V+ L+ PA + +V
Sbjct: 191 DVYVSAPVTLRLGDVDLREVTVNV--HCALVVDGLSPKKKPAIKSAEYRV 238
>Os04g0677300 Pyruvate kinase family protein
Length = 255
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 5/155 (3%)
Query: 104 GAVYLVFRPRAPSFSVASLSIRGLDALAVS-SLTPQIDAAVRADNGANKKTGIDYRGGGE 162
G +Y VF+P+ P F V L++ D A + +++ + V + N N++ GI Y GGE
Sbjct: 89 GILYAVFKPKIPDFHVDRLTVTRFDVNATAATVSDAFEVEVTSTN-PNRRIGI-YYDGGE 146
Query: 163 VTVSYAGERLAAGPWPAFHQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPLTV 222
VT S+ G L G +PA +Q R+ TV L G +LA +Q AG VPLTV
Sbjct: 147 VTASFNGTELCRGGFPALYQGHRS-TVRPVILLAGETRLDSAVALQLARQQQAGFVPLTV 205
Query: 223 EAIVPVRLRFGKVLRTWTVDVKTRCEVTVNKLAAA 257
A VP+R++FG + + W + K C + V+ L A
Sbjct: 206 WARVPIRIKFGAI-KLWKMTGKATCNLVVDNLVAG 239
>Os09g0267400 Harpin-induced 1 domain containing protein
Length = 210
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 4/153 (2%)
Query: 110 FRPRAPSFSVASLSIRGLDALAVS-SLTPQIDAAVRADNGANKKTGIDYRGGGEVTVSYA 168
++P+APS+SV+++S+ D + +L ++ A VRA+N N+ GI Y G VSY
Sbjct: 49 YKPKAPSYSVSNMSVSQFDFNSNDLTLYTKLVATVRAEN-PNEMIGIIYGDGSRTVVSYR 107
Query: 169 GERLAAGPWPAFHQAPRNVTVFSTALAGGGVSFPEEQRKRLAAEQAAGAVPLTVEAIVPV 228
G L +G P F+Q +NVTV ++ G F + L + G VPL V VPV
Sbjct: 108 GTPLCSGHLPTFYQGFKNVTVMEISMEGRH-GFGSGLQSALEESEKEGNVPLDVFVSVPV 166
Query: 229 RLRFGKVLRTWTVDVKTRCEVTVNKLAAAAPPA 261
LRFG V V C + V+ ++ P
Sbjct: 167 SLRFGS-FDVREVRVNVHCALVVDSISPKKKPT 198
>AK072753
Length = 182
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 70/159 (44%), Gaps = 35/159 (22%)
Query: 105 AVYLVFRPRAPSFSVASLSIRGLDALAVSSLTPQIDAAVRADNGANKKTGIDYRGGGEVT 164
A+YLVF P+AP +SV + N + GI Y G ++
Sbjct: 41 ALYLVFDPKAPRYSVTA-------------------------TNPNARIGIYYEAGSSLS 75
Query: 165 VSYAGERLAAGPWPAFHQAPRNVTVFSTALAG----GGVSFPEEQRKRLAAEQAAGAVPL 220
V Y RLA G PAF+Q RN TV + +AG GG Q Q GAVPL
Sbjct: 76 VWYDAHRLARGALPAFYQGHRNTTVLAVVMAGQAQLGGAVMSALQD-----AQRTGAVPL 130
Query: 221 TVEAIVPVRLRFGKVLRTWTVDVKTRCEVTVNKLAAAAP 259
A VPVR+ G LR W V + RC++ V+ L P
Sbjct: 131 VFRADVPVRVELGS-LRLWKVTSRVRCDLVVDSLGVNNP 168
>Os07g0635100
Length = 136
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/33 (93%), Positives = 31/33 (93%)
Query: 31 PLHPSFRGARPPSPGTYIIQIPKDQVLRVPPPD 63
PLHPSFRGA PPSP TYIIQIPKDQVLRVPPPD
Sbjct: 35 PLHPSFRGAPPPSPSTYIIQIPKDQVLRVPPPD 67
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,555,577
Number of extensions: 338614
Number of successful extensions: 1156
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1144
Number of HSP's successfully gapped: 9
Length of query: 276
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 177
Effective length of database: 11,866,615
Effective search space: 2100390855
Effective search space used: 2100390855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)