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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0324200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Harpin-induced 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0208) R2 : 0.0097
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0925 (0.0438) R2dN8 : 0.0125 R2N8 : 0.0097
σ : 0.391
deviance : 70.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.71 0.384 2.78 -0.0135 0.258 -0.243 -1.78 1.65 0.115 11.3 0.3 96 -- --
69.2 0.39 2.79 -0.12 0.131 -0.107 -0.115 -- 0.0769 9.1 0.3 96 -- --
68.27 0.385 2.78 0.0173 0.00409 -0.205 -- 1.35 0.136 0.725 40.18 685 -- --
69.05 0.387 2.79 -0.111 0.108 -0.116 -- -- 0.0794 9.75 4.876e-06 73 -- --
68.04 0.384 2.77 -0.00766 -- -0.177 -- 1.04 0.133 -- 41.06 749 -- --
69.33 0.39 2.79 -0.131 0.0714 -- -0.35 -- 0.0748 5.15 -- -- -- --
69.64 0.391 2.79 -0.131 0.0691 -- -- -- 0.0764 4.84 -- -- -- --
69.36 0.388 2.78 -0.104 -- -0.116 -- -- 0.107 -- 46.01 781 -- --
69.43 0.388 2.79 -- 0.113 -0.113 -- -- 0.0816 10 0.04093 73 -- --
69.89 0.391 2.79 -0.129 -- -- -- -- 0.0782 -- -- -- -- --
70.1 0.392 2.79 -- 0.0668 -- -- -- 0.091 4.9 -- -- -- --
69.75 0.389 2.78 -- -- -0.112 -- -- 0.108 -- 46.07 782 -- --
70.33 0.391 2.79 -- -- -- -- -- 0.0925 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.69 radiation 1.0 90 < th dose independent rect. 14 1
2 59.69 radiation 1.0 90 < th dose dependent rect. 14 1
3 59.98 radiation 1.0 90 < th dose dependent rect. 6 10
6 60.80 radiation 1.0 90 < th dose independent rect. 6 10
104 64.05 temperature 20.0 30 < th dose independent rect. 7 1
107 64.05 temperature 20.0 30 < th dose dependent rect. 7 1
122 64.23 humidity 90.0 270 > th dose independent rect. 11 2
123 64.23 humidity 80.0 270 > th dose dependent rect. 12 1
184 64.62 radiation 1.0 30 < th dose dependent rect. 7 1
198 64.70 wind 7.0 90 > th dose independent rect. 14 1
226 64.98 temperature 20.0 90 > th dose dependent rect. 2 1
228 64.99 humidity 80.0 90 > th dose independent rect. 15 1
242 65.10 humidity 90.0 30 > th dose dependent rect. 2 1
243 65.11 wind 7.0 90 > th dose dependent rect. 14 1
249 65.13 humidity 90.0 30 > th dose independent rect. 2 1
251 65.14 wind 3.0 30 < th dose independent rect. 2 1
252 65.14 temperature 20.0 30 > th dose independent rect. 2 1
257 65.15 wind 3.0 30 < th dose dependent rect. 2 1
261 65.15 humidity 50.0 30 > th dose dependent rect. 2 1
266 65.16 temperature 10.0 30 > th dose independent rect. 2 1
268 65.16 temperature 25.0 30 < th dose independent rect. 2 1
270 65.16 humidity 50.0 30 > th dose independent rect. 2 1
273 65.16 atmosphere 995.0 30 > th dose independent rect. 2 1
275 65.16 atmosphere 1010.0 30 < th dose independent rect. 2 1
277 65.16 radiation 1.0 30 < th dose independent rect. 2 1
282 65.16 precipitation 0.1 30 < th dose independent rect. 2 1
283 65.16 temperature 10.0 30 > th dose independent rect. 3 23
284 65.16 temperature 10.0 30 > th dose dependent rect. 2 1
287 65.16 atmosphere 1005.0 30 > th dose dependent rect. 2 1
288 65.16 atmosphere 1015.0 30 < th dose dependent rect. 2 1
289 65.16 radiation 1.0 30 < th dose dependent rect. 2 1
294 65.16 precipitation 0.1 30 < th dose dependent rect. 2 1
300 65.17 humidity 80.0 90 > th dose dependent rect. 15 1
301 65.17 atmosphere 995.0 30 > th dose dependent rect. 2 1
305 65.18 temperature 30.0 30 < th dose dependent rect. 2 1
307 65.19 wind 1.0 30 > th dose independent rect. 2 1
315 65.21 precipitation 0.1 30 < th dose independent rect. 3 23
319 65.21 precipitation 0.1 30 < th dose dependent rect. 3 23
372 65.31 atmosphere 995.0 30 > th dose independent rect. 3 23
381 65.37 temperature 25.0 90 < th dose independent rect. 14 1
401 65.47 wind 9.0 1440 < th dose independent rect. 3 1
402 65.47 temperature 10.0 1440 > th dose independent rect. 3 1
405 65.47 temperature 30.0 1440 < th dose independent rect. 3 1
409 65.47 humidity 50.0 1440 > th dose independent rect. 3 1
418 65.47 atmosphere 995.0 1440 > th dose independent rect. 3 1
419 65.47 radiation 1.0 1440 < th dose independent rect. 3 1
440 65.47 temperature 10.0 1440 > th dose independent rect. 4 23
443 65.47 radiation 1.0 1440 < th dose dependent rect. 3 1
465 65.53 wind 9.0 30 < th dose independent rect. 3 23
509 65.75 humidity 60.0 10 > th dose dependent rect. 15 1
543 65.86 atmosphere 1005.0 10 < th dose independent rect. 14 2
548 65.87 humidity 90.0 30 > th dose dependent rect. 6 2
554 65.89 humidity 70.0 10 > th dose independent rect. 14 2
627 66.10 radiation 1.0 90 > th dose independent rect. 8 23
633 66.12 radiation 30.0 270 < th dose dependent rect. 12 1
652 66.18 radiation 1.0 90 < th dose independent rect. 6 1
654 66.18 radiation 1.0 90 < th dose dependent rect. 5 23
676 66.25 humidity 50.0 30 > th dose independent rect. 3 23
681 66.26 radiation 1.0 90 < th dose dependent sin 1 NA
697 66.29 radiation 1.0 270 < th dose dependent rect. 22 18
711 66.32 radiation 1.0 90 < th dose independent rect. 5 23
741 66.37 radiation 1.0 90 < th dose dependent rect. 1 15
752 66.40 humidity 90.0 10 > th dose independent rect. 2 7
756 66.41 radiation 1.0 270 < th dose independent rect. 22 18
777 66.46 radiation 1.0 270 < th dose dependent rect. 11 21
800 66.52 humidity 60.0 90 < th dose dependent rect. 12 1
808 66.53 radiation 1.0 90 < th dose independent rect. 1 15
822 66.55 temperature 25.0 270 < th dose independent rect. 12 1
823 66.55 temperature 25.0 270 > th dose independent rect. 23 4
824 66.55 humidity 50.0 30 > th dose independent rect. 2 14
827 66.55 radiation 1.0 270 < th dose dependent rect. 21 23
841 66.57 radiation 1.0 90 > th dose independent rect. 16 23
846 66.57 radiation 40.0 270 < th dose dependent rect. 12 15
847 66.58 humidity 60.0 90 < th dose independent rect. 12 1
848 66.58 humidity 50.0 10 < th dose independent rect. 13 1
859 66.58 humidity 50.0 10 < th dose dependent rect. 13 1
871 66.58 radiation 1.0 270 < th dose dependent rect. 18 22