BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0324200 Os08g0324200|AK107845
(242 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G54540.1 | chr1:20367702-20368421 REVERSE LENGTH=240 116 1e-26
AT1G65690.1 | chr1:24431642-24432898 REVERSE LENGTH=253 114 7e-26
AT5G36970.1 | chr5:14604367-14605194 REVERSE LENGTH=249 108 2e-24
AT2G27080.1 | chr2:11566383-11567165 FORWARD LENGTH=261 80 7e-16
AT5G21130.1 | chr5:7185968-7186813 FORWARD LENGTH=282 75 4e-14
AT2G35980.1 | chr2:15110635-15111318 FORWARD LENGTH=228 73 2e-13
AT5G22200.1 | chr5:7355688-7356871 FORWARD LENGTH=211 58 5e-09
AT3G11650.1 | chr3:3676264-3676986 REVERSE LENGTH=241 55 3e-08
AT2G27260.1 | chr2:11669769-11670500 FORWARD LENGTH=244 52 2e-07
AT2G35460.1 | chr2:14905788-14906504 FORWARD LENGTH=239 52 2e-07
>AT1G54540.1 | chr1:20367702-20368421 REVERSE LENGTH=240
Length = 239
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 83 PKAPSYSVSDMSVARFDVSSSDLTVYAKLVASVRAENPNDMVGIGYGAGSRAAVSYRGTT 142
PK PSY V+ + V ++ DL++ A+ + A NPN+ +GI Y G V Y T
Sbjct: 81 PKLPSYEVNSLRVTNLGINL-DLSLSAEFKVEITARNPNEKIGIYYEKGGHIGVWYDKTK 139
Query: 143 LCSGRLPAFYQGHRNTTVVRVAMEGRHGFGPGLQGALEESEEAGNVPLDVYVSAPVTLRL 202
LC G +P FYQGHRN T + VA+ GR +G + AL++ ++ G VPLD+ V+APV ++L
Sbjct: 140 LCEGPIPRFYQGHRNVTKLNVALTGRAQYGNTVLAALQQQQQTGRVPLDLKVNAPVAIKL 199
Query: 203 GDVDLREVTVNVHCALVVDGLSPKKKPAIKSAE 235
G++ ++++ + C LVVD LS IK+++
Sbjct: 200 GNLKMKKIRILGSCKLVVDSLSTNNNINIKASD 232
>AT1G65690.1 | chr1:24431642-24432898 REVERSE LENGTH=253
Length = 252
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 2/154 (1%)
Query: 82 RPKAPSYSVSDMSVARFDVSSSDLTVYAKLVASVRAENPNDMVGIGYGAGSRAAVSYRGT 141
+PK P YS+ + + RF ++ D ++ ++ A+NPN+ +GI Y GS+ V Y
Sbjct: 92 KPKLPDYSIDRLQLTRFALNQ-DSSLTTAFNVTITAKNPNEKIGIYYEDGSKITVWYMEH 150
Query: 142 TLCSGRLPAFYQGHRNTTVVRVAMEGRHGFGPGLQGALEESEE-AGNVPLDVYVSAPVTL 200
L +G LP FYQGH NTTV+ V M G+ GL+ LEE ++ GN+PL + V+ PV +
Sbjct: 151 QLSNGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQRTGNIPLRIRVNQPVRV 210
Query: 201 RLGDVDLREVTVNVHCALVVDGLSPKKKPAIKSA 234
+ G + L EV V C + VD L+ I+S+
Sbjct: 211 KFGKLKLFEVRFLVRCGVFVDSLATNNVIKIQSS 244
>AT5G36970.1 | chr5:14604367-14605194 REVERSE LENGTH=249
Length = 248
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 84/144 (58%), Gaps = 2/144 (1%)
Query: 82 RPKAPSYSVSDMSVARFDVSSSDLTVYAKLVASVRAENPNDMVGIGYGAGSRAAVSYRGT 141
RPK P Y++ + + RF ++ DL++ ++ A+NPN+ +GI Y GS+ +V Y T
Sbjct: 88 RPKFPDYNIDRLQLTRFQLNQ-DLSLSTAFNVTITAKNPNEKIGIYYEDGSKISVLYMQT 146
Query: 142 TLCSGRLPAFYQGHRNTTVVRVAMEGRHGFGPGLQGALEESEE-AGNVPLDVYVSAPVTL 200
+ +G LP FYQGH NTT++ V M G L L+E + G++PL + V+ PV +
Sbjct: 147 RISNGSLPKFYQGHENTTIILVEMTGFTQNATSLMTTLQEQQRLTGSIPLRIRVTQPVRI 206
Query: 201 RLGDVDLREVTVNVHCALVVDGLS 224
+LG + L +V V C + VD L+
Sbjct: 207 KLGKLKLMKVRFLVRCGVSVDSLA 230
>AT2G27080.1 | chr2:11566383-11567165 FORWARD LENGTH=261
Length = 260
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 82 RPKAPSYSVSDMSVARFDVSSSDLTVYAKLVASVRAENPNDMVGIGYGAGSRAAVSYRGT 141
RP+AP YS+ SV+ +++S+ + +VR+ N N +G+ Y S V Y
Sbjct: 101 RPEAPKYSIEGFSVSGINLNSTS-PISPSFNVTVRSRNGNGKIGVYYEKESSVDVYYNDV 159
Query: 142 TLCSGRLPAFYQGHRNTTVVRVAMEG-RHGFGPGLQGALEESEEAGNVPLDVYVSAPVTL 200
+ +G +P FYQ +N TVV++ + G + G++ + VP + + APV +
Sbjct: 160 DISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLKIKAPVKI 219
Query: 201 RLGDVDLREVTVNVHCALVVDGLS 224
+ G V + VNV C + VD L+
Sbjct: 220 KFGSVKTWTMIVNVDCDVTVDKLT 243
>AT5G21130.1 | chr5:7185968-7186813 FORWARD LENGTH=282
Length = 281
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 82 RPKAPSYSVSDMSVARFDVSSSDLTVYAKLV-ASVRAENPNDMVGIGYGAGSRAAVSYRG 140
+P P +SVS +SV +++SS + ++ ++ +R++N +G+ Y G+ A V + G
Sbjct: 122 QPHKPQFSVSGVSVTGINLTSS--SPFSPVIRIKLRSQNVKGKLGLIYEKGNEADVFFNG 179
Query: 141 TTLCSGRLPAFYQGHRNTTVVRVAMEGRH-GFGPGLQGALEESEEAGNVPLDVYVSAPVT 199
T L +G AF Q N TV+ ++G + L ES++ G VP + + APV
Sbjct: 180 TKLGNGEFTAFKQPAGNVTVIVTVLKGSSVKLKSSSRKELTESQKKGKVPFGLRIKAPVK 239
Query: 200 LRLGDVDLREVTVNVHCALVVDGLS 224
++G V +T+ V C + VD L+
Sbjct: 240 FKVGSVTTWTMTITVDCKITVDKLT 264
>AT2G35980.1 | chr2:15110635-15111318 FORWARD LENGTH=228
Length = 227
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 82 RPKAPSYSVSDMSVARFDVSSSDLTVYAKLVASVRAENPNDMVGIGYGAGSRAAVSYRGT 141
RP+A + V+D S+ RFD +S D + L +V NPN +G+ Y A Y G
Sbjct: 64 RPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDR-IEAHAYYEGK 122
Query: 142 TLCSGRLPAFYQGHRNTTVVRVAMEGRHG--FGPGLQGALEESEEAGNVPLDVYVSAPVT 199
+ L FYQGH+NTTV+ +G++ F G L +G +++ V
Sbjct: 123 RFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVR 182
Query: 200 LRLGDVDLREVTVNVHC 216
+LGD+ R + V C
Sbjct: 183 FKLGDLKFRRIKPKVDC 199
>AT5G22200.1 | chr5:7355688-7356871 FORWARD LENGTH=211
Length = 210
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Query: 82 RPKAPSYSVSDMSVARFDVSSSDLTVYAKLVASVRAENPNDMVGIGYGAGSRAAVSYRGT 141
P P + + D+++ F+VS + + + L +V + NPND +GI Y V+YR
Sbjct: 47 HPHGPRFVLQDVTINDFNVSQPNF-LSSNLQVTVSSRNPNDKIGIFYDRLD-IYVTYRNQ 104
Query: 142 TLCSGR-LPAFYQGHRNTTVVRVAMEGRH-GFGPGLQGALEESEEAGNVPLDVYVSAPVT 199
+ R LP+ YQGH TV + G P L AL E AG V L++ + V
Sbjct: 105 EVTLARLLPSTYQGHLEVTVWSPFLIGSAVPVAPYLSSALNEDLFAGLVLLNIKIDGWVR 164
Query: 200 LRLGDVDLREVTVNVHC--ALVVDGLSPKKKPAIK 232
++G ++V+C + V G PAIK
Sbjct: 165 WKVGSWVSGSYRLHVNCPAFITVTGKLTGTGPAIK 199
>AT3G11650.1 | chr3:3676264-3676986 REVERSE LENGTH=241
Length = 240
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 82 RPKAPSYSVSDMSVARFDVSSSDLTVYAKLVASVRAENPNDMVGIGYGAGSRAAVSYRGT 141
RP A + V+D ++ RF ++ ++ L + NPN VG+ Y S + Y
Sbjct: 78 RPNAVKFYVADANLNRFSFDPNN-NLHYSLDLNFTIRNPNQRVGVYYDEFSVSGY-YGDQ 135
Query: 142 TLCSGRLPAFYQGHRNTTVVRVAMEGRH--GFGPGLQGALEESEEAGNVPLDVYVSAPVT 199
S + +FYQGH+NTTV+ +EG++ G G + L++ E++G ++ + V
Sbjct: 136 RFGSANVSSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEKSGIYRINAKLRLSVR 195
Query: 200 LRLGDVDLREVTVNVHC 216
+ + ++ + C
Sbjct: 196 FKFWFIKSWKLKPKIKC 212
>AT2G27260.1 | chr2:11669769-11670500 FORWARD LENGTH=244
Length = 243
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 82 RPKAPSYSVSDMSVARFDVSSSDLTVYAKLVASVRAENPNDMVGIGYGAGSRAAVSYRGT 141
RP+ P +++ +SV+ F+VS++ ++ K ++ NPN + + Y + A+ Y
Sbjct: 85 RPQLPDVNLNSLSVSNFNVSNNQVS--GKWDLQLQFRNPNSKMSLHYET-ALCAMYYNRV 141
Query: 142 TLCSGRLPAFYQGHRNTTVVR--VAMEGRHGFGPGLQGALEESEEAGNVPLDVYVSAPVT 199
+L RL F QG ++ TVV +++ G + G + +E GNV D+ + + VT
Sbjct: 142 SLSETRLQPFDQGKKDQTVVNATLSVSGTYVDGRLVDSIGKERSVKGNVEFDLRMISYVT 201
Query: 200 LRLGDVDLREVTVNVHCALVVDGL 223
R G R V V+C V G+
Sbjct: 202 FRYGAFRRRRY-VTVYCDDVAVGV 224
>AT2G35460.1 | chr2:14905788-14906504 FORWARD LENGTH=239
Length = 238
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 3/141 (2%)
Query: 82 RPKAPSYSVSDMSVARFDVSSSDLTVYAKLVASVRAENPNDMVGIGYGAGSRAAVSYRGT 141
RP + V++ + RF+ ++ + + NPN +GI Y Y
Sbjct: 77 RPNVVKFQVTEADLTRFEFDPRSHNLHYNISLNFSIRNPNQRLGIHYDQLEVRGY-YGDQ 135
Query: 142 TLCSGRLPAFYQGHRNTTVVRVAMEGRH--GFGPGLQGALEESEEAGNVPLDVYVSAPVT 199
+ + +FYQGH+NTTVV + G+ G G + E +G +DV + +
Sbjct: 136 RFSAANMTSFYQGHKNTTVVGTELNGQKLVLLGAGGRRDFREDRRSGVYRIDVKLRFKLR 195
Query: 200 LRLGDVDLREVTVNVHCALVV 220
+ G ++ V + C L V
Sbjct: 196 FKFGFLNSWAVRPKIKCHLKV 216
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,318,428
Number of extensions: 158031
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 10
Length of query: 242
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,474,633
Effective search space: 1237296418
Effective search space used: 1237296418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)