BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0259200 Os09g0259200|Os09g0259200
(78 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0259200 MtN3 and saliva related transmembrane protein ... 157 1e-39
Os09g0258700 MtN3 and saliva related transmembrane protein ... 145 5e-36
Os12g0178500 117 2e-27
Os01g0606000 MtN3 and saliva related transmembrane protein ... 105 1e-23
Os01g0605700 MtN3 and saliva related transmembrane protein ... 104 1e-23
Os05g0588500 MtN3 and saliva related transmembrane protein ... 94 3e-20
Os01g0881300 MtN3 and saliva related transmembrane protein ... 64 3e-11
>Os09g0259200 MtN3 and saliva related transmembrane protein family protein
Length = 78
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MVFYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAV 60
MVFYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAV
Sbjct: 1 MVFYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAV 60
Query: 61 ALGVLLDAHTHQRRSSAP 78
ALGVLLDAHTHQRRSSAP
Sbjct: 61 ALGVLLDAHTHQRRSSAP 78
>Os09g0258700 MtN3 and saliva related transmembrane protein family protein
Length = 375
Score = 145 bits (367), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/74 (97%), Positives = 72/74 (97%)
Query: 2 VFYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAVA 61
VFYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAV
Sbjct: 58 VFYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAVV 117
Query: 62 LGVLLDAHTHQRRS 75
LGVLL AHTHQRRS
Sbjct: 118 LGVLLGAHTHQRRS 131
>Os12g0178500
Length = 240
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 61/64 (95%)
Query: 12 NSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAVALGVLLDAHTH 71
+ ILVVTINGI LVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAVA+GVLL AHTH
Sbjct: 45 DPILVVTINGISLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAVAVGVLLGAHTH 104
Query: 72 QRRS 75
QRRS
Sbjct: 105 QRRS 108
>Os01g0606000 MtN3 and saliva related transmembrane protein family protein
Length = 259
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 59/74 (79%)
Query: 2 VFYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAVA 61
VFYG+P+VHPNSILVVTINGIGL++E YL IFFL+S K + +M VL E +FM AV
Sbjct: 58 VFYGIPVVHPNSILVVTINGIGLLVEGTYLLIFFLYSPNKKRLRMCAVLGVELVFMLAVI 117
Query: 62 LGVLLDAHTHQRRS 75
LGVLL AHTH++RS
Sbjct: 118 LGVLLGAHTHEKRS 131
>Os01g0605700 MtN3 and saliva related transmembrane protein family protein
Length = 254
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 59/74 (79%)
Query: 2 VFYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAVA 61
VFYG+PIVHPNSILVVTINGIGL++E YL IFFL+S K + +M VL E +FM AV
Sbjct: 58 VFYGIPIVHPNSILVVTINGIGLIVEGTYLFIFFLYSPNKKRLRMLAVLGVELVFMLAVI 117
Query: 62 LGVLLDAHTHQRRS 75
LGVLL AHTH++RS
Sbjct: 118 LGVLLSAHTHKKRS 131
>Os05g0588500 MtN3 and saliva related transmembrane protein family protein
Length = 237
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 56/74 (75%)
Query: 2 VFYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAVA 61
VFYGLP +HPNSILVVTING GL+IE YL I+F ++ K + +M VL E +F+AAVA
Sbjct: 59 VFYGLPFIHPNSILVVTINGTGLLIEIAYLAIYFAYAPKPKRCRMLGVLTVELVFLAAVA 118
Query: 62 LGVLLDAHTHQRRS 75
GVLL AHT+ +RS
Sbjct: 119 AGVLLGAHTYDKRS 132
>Os01g0881300 MtN3 and saliva related transmembrane protein family protein
Length = 273
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%)
Query: 3 FYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAVAL 62
+YGLP V PN+ILV TING G VIEA+Y+ IF +F+++K + KM +L V L
Sbjct: 57 WYGLPFVSPNNILVTTINGTGSVIEAIYVVIFLIFAERKARLKMMGLLGLVTSIFTMVVL 116
Query: 63 GVLLDAHTHQRR 74
LL H R+
Sbjct: 117 VSLLALHGQGRK 128
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.141 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,152,955
Number of extensions: 58580
Number of successful extensions: 193
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 9
Length of query: 78
Length of database: 17,035,801
Length adjustment: 49
Effective length of query: 29
Effective length of database: 14,477,315
Effective search space: 419842135
Effective search space used: 419842135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)