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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0259200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MtN3 and saliva related transmembrane protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.51 (0.0426) R2 : 0.296
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.812 (0.106) R2dC : 0.0937 R2C : 0.119
β3 : 1.69 (0.179) R2dE : 0.158 R2E : 0.197
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.124 (0.0941) R2dN8 : 0.00372 R2N8 : 0.0181
σ : 0.786
deviance : 284.52
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_____
C
peak time of C : 20.6
E
wheather : temperature
threshold : 26.16
memory length : 23
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
268.77 0.77 4.49 0.397 0.798 1.75 -1.79 -0.302 -0.0529 20.9 25.9 23 -- --
268.9 0.764 4.49 0.346 0.797 1.76 -1.85 -- -0.0639 20.9 25.99 23 -- --
278.35 0.777 4.48 0.588 0.806 1.87 -- -0.76 0.000583 20.4 26.28 23 -- --
280.07 0.779 4.49 0.432 0.811 1.84 -- -- -0.0385 20.4 26.27 19 -- --
313.49 0.829 4.45 0.601 -- 1.92 -- -0.97 0.00808 -- 26.05 16 -- --
317.32 0.835 4.58 -0.0781 0.975 -- -1.77 -- -0.447 22.2 -- -- -- --
329.89 0.851 4.58 -0.00845 0.983 -- -- -- -0.443 22.3 -- -- -- --
315.08 0.83 4.46 0.449 -- 1.99 -- -- -0.0267 -- 25.85 14 -- --
284.52 0.786 4.51 -- 0.812 1.69 -- -- -0.124 20.6 26.16 23 -- --
388.6 0.921 4.56 0.00619 -- -- -- -- -0.441 -- -- -- -- --
329.89 0.85 4.58 -- 0.983 -- -- -- -0.443 22.2 -- -- -- --
319.75 0.836 4.48 -- -- 1.86 -- -- -0.1 -- 25.89 10 -- --
388.6 0.92 4.56 -- -- -- -- -- -0.442 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 265.57 temperature 25 10 < th dose dependent rect. 4 23
7 266.72 temperature 25 10 < th dose dependent sin 18 NA
12 267.30 temperature 30 10 < th dose dependent rect. 23 23
25 269.98 temperature 30 90 < th dose dependent rect. 13 22
27 270.17 temperature 30 30 < th dose dependent rect. 21 23
33 270.45 temperature 25 10 < th dose dependent rect. 13 23
40 270.74 temperature 25 30 < th dose dependent rect. 7 23
43 270.83 temperature 25 30 < th dose dependent no NA NA
44 270.84 temperature 15 90 > th dose dependent rect. 17 23
45 270.85 temperature 25 30 < th dose dependent rect. 1 23
46 270.87 temperature 25 30 < th dose dependent rect. 9 23
47 270.87 temperature 25 30 < th dose dependent rect. 15 23
48 270.88 temperature 25 30 < th dose dependent rect. 11 23
49 270.89 temperature 25 30 < th dose dependent rect. 17 23
51 270.91 temperature 25 30 < th dose dependent rect. 19 23
72 271.43 temperature 30 90 < th dose dependent rect. 15 20
82 271.89 temperature 15 90 > th dose dependent rect. 5 23
87 272.22 temperature 15 10 > th dose dependent sin 16 NA
133 273.52 temperature 20 10 > th dose dependent rect. 6 23
177 273.99 temperature 10 10 > th dose dependent no NA NA
206 274.38 temperature 25 4320 > th dose independent rect. 19 1
226 274.62 temperature 10 270 > th dose dependent rect. 15 23
232 274.69 temperature 25 4320 < th dose independent rect. 19 2
249 274.90 temperature 25 10 < th dose dependent rect. 12 15
277 275.30 temperature 30 90 < th dose dependent rect. 15 18
292 275.40 temperature 30 10 < th dose dependent rect. 14 18
320 275.67 temperature 15 10 > th dose dependent rect. 1 23
328 275.78 temperature 25 90 < th dose dependent rect. 11 15
347 275.99 temperature 15 10 > th dose dependent rect. 3 23
366 276.17 temperature 30 30 < th dose dependent rect. 23 21
375 276.23 temperature 20 270 > th dose dependent rect. 17 9
388 276.31 temperature 20 10 > th dose dependent rect. 15 23
401 276.40 temperature 20 90 > th dose dependent rect. 11 23
441 276.72 temperature 25 270 < th dose dependent rect. 11 12
463 277.03 temperature 20 90 > th dose dependent rect. 6 20
482 277.30 temperature 10 720 > th dose dependent rect. 9 14
498 277.44 temperature 10 270 > th dose dependent rect. 3 23
503 277.47 wind 7 43200 > th dose independent rect. 20 1
543 277.85 temperature 20 10 > th dose dependent rect. 12 23
562 277.99 wind 9 43200 > th dose dependent rect. 18 4
594 278.12 temperature 10 720 > th dose dependent rect. 6 17
603 278.20 wind 9 43200 > th dose independent rect. 18 4
665 278.55 temperature 20 90 > th dose dependent rect. 6 18
675 278.57 wind 9 43200 < th dose independent rect. 18 3
724 278.84 wind 9 43200 > th dose dependent rect. 19 2
725 278.85 temperature 20 720 > th dose dependent rect. 11 10
768 279.11 temperature 20 720 > th dose dependent sin 20 NA
789 279.19 temperature 30 720 < th dose dependent rect. 7 15
795 279.21 temperature 10 720 > th dose dependent rect. 11 10
812 279.27 temperature 20 10 > th dose dependent rect. 12 14
815 279.28 temperature 30 720 < th dose dependent rect. 7 17
829 279.32 temperature 25 90 > th dose independent rect. 12 12
850 279.42 temperature 20 10 > th dose dependent rect. 9 23
859 279.46 temperature 20 10 > th dose dependent rect. 12 16
876 279.57 wind 7 43200 < th dose independent rect. 20 1
878 279.58 radiation 1 43200 < th dose dependent rect. 21 3
993 280.05 temperature 25 4320 > th dose dependent rect. 17 1