BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0259200 Os09g0259200|Os09g0259200
(78 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G28007.1 | chr3:10408243-10409633 REVERSE LENGTH=252 86 3e-18
AT5G62850.1 | chr5:25230204-25231527 REVERSE LENGTH=241 77 2e-15
AT4G10850.1 | chr4:6675068-6676718 FORWARD LENGTH=259 73 3e-14
AT1G66770.1 | chr1:24906451-24907236 REVERSE LENGTH=262 69 5e-13
AT5G40260.1 | chr5:16089842-16091527 FORWARD LENGTH=240 57 3e-09
AT1G21460.1 | chr1:7512030-7513281 REVERSE LENGTH=248 52 7e-08
AT5G53190.1 | chr5:21572417-21574284 REVERSE LENGTH=264 47 3e-06
>AT3G28007.1 | chr3:10408243-10409633 REVERSE LENGTH=252
Length = 251
Score = 86.3 bits (212), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 52/75 (69%)
Query: 2 VFYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAVA 61
VFYGLP+V P+S+LV+TING GL IE VYL IFF FS K K+G+ L E +F+ VA
Sbjct: 58 VFYGLPMVQPDSLLVITINGTGLAIELVYLAIFFFFSPTSRKVKVGLWLIGEMVFVGIVA 117
Query: 62 LGVLLDAHTHQRRSS 76
LL HTH +RSS
Sbjct: 118 TCTLLLFHTHNQRSS 132
>AT5G62850.1 | chr5:25230204-25231527 REVERSE LENGTH=241
Length = 240
Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 3 FYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAVAL 62
FYGLP V P+S+LV+TING GL +E VY+TIFF+F+ ++K+ + + E +FMA V
Sbjct: 59 FYGLPFVQPDSLLVITINGTGLFMELVYVTIFFVFATSPVRRKITIAMVIEVIFMAVVIF 118
Query: 63 GVLLDAHTHQRRS 75
+ HT ++RS
Sbjct: 119 CTMYFLHTTKQRS 131
>AT4G10850.1 | chr4:6675068-6676718 FORWARD LENGTH=259
Length = 258
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 2 VFYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKK-MGVVLATEALFMAAV 60
V YGLP VHP+S LV+TING G++IE V+LTIFF++ ++ ++ + V+A E F+A +
Sbjct: 60 VLYGLPTVHPDSTLVITINGTGILIEIVFLTIFFVYCGRQKQRLIISAVIAAETAFIAIL 119
Query: 61 ALGVLLDAHTHQRRS 75
A+ VL HT ++R+
Sbjct: 120 AVLVLTLQHTTEKRT 134
>AT1G66770.1 | chr1:24906451-24907236 REVERSE LENGTH=262
Length = 261
Score = 68.9 bits (167), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 4 YGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKK-KMGVVLATEALFMAAVAL 62
YGLP+VHP+S L+VTI+GIG+ IE V+LTIFF+F ++ + + VL + +F+A +A+
Sbjct: 62 YGLPMVHPDSTLLVTISGIGITIEIVFLTIFFVFCGRQQHRLVISAVLTVQVVFVATLAV 121
Query: 63 GVLLDAHTHQRRS 75
VL HT +R+
Sbjct: 122 LVLTLEHTTDQRT 134
>AT5G40260.1 | chr5:16089842-16091527 FORWARD LENGTH=240
Length = 239
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 1 MVFYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVV--LATEALFMA 58
VFYGLP+VH +SILV TING+GLVIE Y+ ++ ++ K + ++ LA E + +
Sbjct: 57 WVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVV 116
Query: 59 AVAL 62
A+ L
Sbjct: 117 AIIL 120
>AT1G21460.1 | chr1:7512030-7513281 REVERSE LENGTH=248
Length = 247
Score = 51.6 bits (122), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 3 FYGLPIVHPNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAVAL 62
+YGLP V ++ LV TING G VIE VY+ IF ++ KK K K+ + + A VAL
Sbjct: 56 WYGLPFVSKDNTLVSTINGTGAVIETVYVLIFLFYAPKKEKIKIFGIFSCVLAVFATVAL 115
Query: 63 GVLLDAHTHQRR 74
L + R+
Sbjct: 116 VSLFALQGNGRK 127
>AT5G53190.1 | chr5:21572417-21574284 REVERSE LENGTH=264
Length = 263
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 8/77 (10%)
Query: 3 FYGLPIVH--PNSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGV----VLATEALF 56
+YGLPIV ++ +VTING+G+++E++++ I+F ++ K K K+GV V+ L
Sbjct: 57 WYGLPIVSHLWENLPLVTINGVGILLESIFIFIYFYYASPKEKIKVGVTFVPVIVGFGLT 116
Query: 57 MAAVALGVLLDAHTHQR 73
A AL + D H H++
Sbjct: 117 TAISAL--VFDDHRHRK 131
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.141 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,445,690
Number of extensions: 43744
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 8
Length of query: 78
Length of database: 11,106,569
Length adjustment: 50
Effective length of query: 28
Effective length of database: 9,735,769
Effective search space: 272601532
Effective search space used: 272601532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)