Os01g0606000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MtN3 and saliva related transmembrane protein family protein.
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Os01g0606000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MtN3 and saliva related transmembrane protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 364.7 | 0.897 | 7.1 | -1.99 | 0.796 | 3.12 | 1.95 | 3.16 | -0.305 | 12.2 | 89.74 | 848 | 15.9 | 16.1 |
| 374.51 | 0.901 | 7.11 | -2.08 | 0.77 | 3.15 | 1.55 | -- | -0.271 | 11.4 | 88.32 | 863 | 15.7 | 16.7 |
| 377.8 | 0.905 | 7.11 | -2 | 0.845 | 3.07 | -- | 2.13 | -0.303 | 11.6 | 88.64 | 859 | 15.8 | 16.6 |
| 376.72 | 0.904 | 7.07 | -2.32 | 0.789 | 2.82 | -- | -- | -0.203 | 11.6 | 85.38 | 882 | 15.7 | 16.5 |
| 399.11 | 0.93 | 7.12 | -2.01 | -- | 2.75 | -- | 2.15 | -0.344 | -- | 88.46 | 912 | 16 | 16.8 |
| 603.16 | 1.15 | 7.13 | -2.19 | 0.679 | -- | -0.243 | -- | -0.423 | 4.53 | -- | -- | -- | -- |
| 603.26 | 1.15 | 7.13 | -2.18 | 0.68 | -- | -- | -- | -0.422 | 4.71 | -- | -- | -- | -- |
| 401.46 | 0.933 | 7.08 | -2.3 | -- | 2.78 | -- | -- | -0.181 | -- | 85.01 | 910 | 16.2 | 16.6 |
| 504.11 | 1.05 | 7.08 | -- | 0.975 | 3.56 | -- | -- | -0.145 | 13.4 | 91.5 | 866 | 15.9 | 15.7 |
| 627.79 | 1.17 | 7.14 | -2.16 | -- | -- | -- | -- | -0.404 | -- | -- | -- | -- | -- |
| 728.97 | 1.26 | 7.08 | -- | 0.64 | -- | -- | -- | -0.178 | 4.81 | -- | -- | -- | -- |
| 529.28 | 1.07 | 7.1 | -- | -- | 3.14 | -- | -- | -0.282 | -- | 94.15 | 911 | 15.9 | 16.9 |
| 750.66 | 1.28 | 7.08 | -- | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 371.79 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 13 |
| 6 | 372.42 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 8 | 372.61 | temperature | 25 | 14400 | > th | dose dependent | sin | 10 | NA |
| 12 | 372.72 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 15 | 372.84 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 19 | 373.04 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 22 | 373.09 | temperature | 30 | 43200 | > th | dose dependent | rect. | 15 | 4 |
| 54 | 373.24 | temperature | 30 | 43200 | > th | dose dependent | sin | 13 | NA |
| 66 | 373.43 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 97 | 373.72 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 233 | 374.68 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 275 | 374.82 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 370 | 374.88 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 15 |
| 374 | 374.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 13 |
| 379 | 374.90 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 471 | 375.40 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 515 | 375.55 | temperature | 30 | 14400 | < th | dose independent | sin | 4 | NA |
| 777 | 376.22 | temperature | 30 | 14400 | < th | dose independent | rect. | 9 | 18 |
| 782 | 376.23 | temperature | 30 | 14400 | < th | dose independent | rect. | 9 | 10 |
| 783 | 376.23 | temperature | 30 | 14400 | < th | dose independent | rect. | 9 | 16 |
| 785 | 376.23 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 904 | 376.59 | temperature | 30 | 14400 | > th | dose independent | sin | 3 | NA |