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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0588500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MtN3 and saliva related transmembrane protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.47 (0.0584) R2 : 0.424
β1 : 1.28 (0.212) R2dD : 0.0488 R2D : 0.0243
β2 : 0.551 (0.139) R2dC : 0.0197 R2C : 0.0149
β3 : -2.87 (0.222) R2dE : 0.248 R2E : 0.0862
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.7 (0.954) R2dD*E : 0.248 R2D*E : 0.107
γ1 : -0.24 (0.128) R2dN8 : 0.0065 R2N8 : 0.0134
σ : 1.07
deviance : 526.12
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_____
C
peak time of C : 14.2
E
wheather : wind
threshold : 6.601
memory length : 4312
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.4
open length of G : 2.93

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
523.72 1.08 3.47 1.25 0.55 -2.85 0.851 -12.7 -0.242 14.3 6.601 4315 18.4 2.97
634.31 1.17 3.46 0.758 0.501 -2.42 0.601 -- -0.279 14.5 8.416 4318 18.4 3.17
526.12 1.07 3.47 1.28 0.551 -2.87 -- -12.7 -0.24 14.2 6.601 4312 18.4 2.93
630.44 1.17 3.47 1.19 0.486 -2.69 -- -- -0.221 14.1 8.726 4318 18.5 3.1
544.02 1.09 3.47 1.25 -- -2.86 -- -12.9 -0.253 -- 6.631 4312 18.4 2.95
839.99 1.36 3.43 0.955 0.633 -- 0.873 -- -0.416 14.4 -- -- -- --
842.71 1.36 3.42 0.979 0.633 -- -- -- -0.411 14.2 -- -- -- --
639.49 1.18 3.47 0.73 -- -2.91 -- -- -0.232 -- 8.7 4318 18.4 3.25
633.27 1.17 3.47 -- 0.555 -2.82 -- -- -0.317 13.6 8.791 4318 18.5 3.14
866.59 1.38 3.43 0.952 -- -- -- -- -0.426 -- -- -- -- --
867.95 1.38 3.45 -- 0.615 -- -- -- -0.52 14.2 -- -- -- --
651.59 1.19 3.46 -- -- -2.97 -- -- -0.303 -- 8.787 4318 18.4 3.25
890.5 1.39 3.45 -- -- -- -- -- -0.532 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 546.15 wind 7 4320 < th dose independent rect. 18 3
3 548.43 wind 7 4320 > th dose independent rect. 18 3
5 551.43 wind 7 4320 > th dose dependent rect. 18 3
9 552.93 wind 5 4320 > th dose dependent rect. 20 2
12 553.50 wind 9 4320 > th dose dependent rect. 20 1
29 554.82 wind 9 4320 > th dose independent rect. 20 1
49 557.30 wind 9 4320 > th dose independent rect. 18 8
72 560.48 wind 9 4320 < th dose independent rect. 18 9
84 561.74 wind 9 4320 < th dose independent rect. 20 7
124 569.08 atmosphere 995 14400 > th dose independent rect. 11 9
129 569.48 atmosphere 995 14400 < th dose independent rect. 15 3
165 569.81 atmosphere 995 14400 > th dose independent rect. 15 5
189 570.16 atmosphere 995 14400 > th dose independent rect. 16 1
193 570.28 atmosphere 995 14400 < th dose dependent rect. 15 4
387 582.36 radiation 1 14400 < th dose dependent rect. 23 3
392 583.49 radiation 1 14400 < th dose dependent rect. 20 6
402 585.03 humidity 90 1440 < th dose dependent rect. 23 8
435 588.41 humidity 90 1440 < th dose dependent rect. 3 1
442 589.12 humidity 80 1440 < th dose independent rect. 22 1
483 592.89 humidity 70 1440 > th dose dependent rect. 24 7
495 593.91 humidity 90 1440 < th dose dependent rect. 2 5
512 594.18 atmosphere 995 14400 < th dose dependent sin 23 NA
532 594.89 atmosphere 995 14400 > th dose independent sin 3 NA
538 595.27 atmosphere 995 14400 > th dose independent sin 23 NA
557 596.39 atmosphere 995 14400 < th dose independent sin 22 NA
578 597.11 atmosphere 995 14400 < th dose independent sin 2 NA
587 597.33 humidity 90 1440 < th dose dependent rect. 23 5
622 599.21 wind 5 1440 > th dose independent rect. 7 16
722 601.22 atmosphere 1005 14400 > th dose independent rect. 6 2
776 601.92 atmosphere 1005 14400 < th dose independent rect. 5 3
793 602.14 atmosphere 1005 14400 < th dose independent rect. 6 1
843 602.65 atmosphere 995 14400 > th dose independent rect. 12 23
847 602.67 atmosphere 995 14400 > th dose independent no NA NA
849 602.69 atmosphere 995 14400 > th dose independent rect. 10 23
850 602.69 atmosphere 995 14400 > th dose independent rect. 14 23
995 604.55 wind 5 1440 < th dose independent rect. 7 16