Os01g0605700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MtN3 and saliva related transmembrane protein family protein.
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Os01g0605700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MtN3 and saliva related transmembrane protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 397.01 | 0.936 | 7.25 | -4.95 | 1.28 | 3.65 | 2.04 | -5.51 | -0.943 | 9.05 | 25.83 | 1152 | -- | -- |
| 405.51 | 0.938 | 7.11 | -3.67 | 1.37 | 3.16 | 2.53 | -- | -0.664 | 8.93 | 25.78 | 1116 | -- | -- |
| 410.58 | 0.944 | 7.29 | -5.13 | 1.23 | 3.68 | -- | -6.48 | -1.04 | 8.91 | 25.65 | 1171 | -- | -- |
| 421.06 | 0.956 | 7.08 | -3.57 | 1.05 | 2.83 | -- | -- | -0.57 | 8.66 | 26.41 | 1238 | -- | -- |
| 470.63 | 1.01 | 7.34 | -5.16 | -- | 3.33 | -- | -5.67 | -1.08 | -- | 25.53 | 1345 | -- | -- |
| 737.05 | 1.27 | 7.06 | -2.74 | 0.984 | -- | 1.74 | -- | -0.451 | 7.31 | -- | -- | -- | -- |
| 744.43 | 1.28 | 7.06 | -2.71 | 1 | -- | -- | -- | -0.457 | 6.87 | -- | -- | -- | -- |
| 475.29 | 1.02 | 7.1 | -3.58 | -- | 2.65 | -- | -- | -0.532 | -- | 26.53 | 1352 | -- | -- |
| 728.87 | 1.26 | 6.92 | -- | 1.06 | 2.13 | -- | -- | 0.112 | 8.46 | 28.43 | 1195 | -- | -- |
| 796.91 | 1.32 | 7.08 | -2.69 | -- | -- | -- | -- | -0.438 | -- | -- | -- | -- | -- |
| 937.58 | 1.43 | 6.99 | -- | 0.97 | -- | -- | -- | -0.155 | 7.04 | -- | -- | -- | -- |
| 783.39 | 1.3 | 6.95 | -- | -- | 1.99 | -- | -- | 0.134 | -- | 28.6 | 1294 | -- | -- |
| 987.16 | 1.47 | 7.01 | -- | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 383.14 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 8 | 383.64 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 10 | 383.69 | temperature | 25 | 14400 | > th | dose dependent | sin | 12 | NA |
| 23 | 384.19 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 34 | 384.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 43 | 384.99 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 49 | 385.36 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 52 | 385.38 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 17 |
| 55 | 385.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 14 |
| 86 | 385.81 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 91 | 385.88 | temperature | 30 | 14400 | < th | dose independent | sin | 21 | NA |
| 117 | 386.08 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 134 | 386.15 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 137 | 386.16 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 18 |
| 230 | 386.56 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 22 |
| 260 | 386.58 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 298 | 386.70 | temperature | 30 | 14400 | > th | dose independent | sin | 20 | NA |
| 307 | 386.76 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 311 | 386.78 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 396 | 387.49 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 418 | 387.63 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 526 | 387.79 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 531 | 387.86 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 541 | 387.98 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 610 | 388.17 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 675 | 388.62 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 700 | 389.08 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 733 | 389.31 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 800 | 389.83 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 806 | 389.88 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 818 | 389.92 | temperature | 25 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 835 | 390.03 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 859 | 390.26 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 872 | 390.34 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 922 | 390.55 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |