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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0258700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MtN3 and saliva related transmembrane protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0247) R2 : 0.014
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.132 (0.052) R2dN8 : 0.0181 R2N8 : 0.014
σ : 0.465
deviance : 99.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.98 0.455 3.14 0.975 0.152 0.622 0.198 -4.43 0.278 6.84 29.65 1752 -- --
96.03 0.456 3.24 0.432 0.183 0.459 -0.286 -- 0.251 7.06 19 8164 -- --
94 0.452 3.14 0.976 0.147 0.64 -- -4.54 0.276 6.32 29.62 1812 -- --
95.13 0.454 3.22 0.403 0.226 0.439 -- -- 0.265 5.93 19.6 8129 -- --
95.07 0.454 3.15 1.01 -- 0.691 -- -4.71 0.28 -- 29.67 1820 -- --
96.89 0.461 3.25 0.0742 0.201 -- 0.105 -- 0.137 6.35 -- -- -- --
96.91 0.461 3.25 0.0752 0.202 -- -- -- 0.137 6.19 -- -- -- --
97.17 0.459 3.22 0.372 -- 0.399 -- -- 0.259 -- 19.6 7841 -- --
96.35 0.457 3.23 -- 0.217 0.171 -- -- 0.206 6.61 23 4915 -- --
99.03 0.465 3.25 0.0808 -- -- -- -- 0.141 -- -- -- -- --
97.06 0.461 3.25 -- 0.203 -- -- -- 0.129 6.17 -- -- -- --
98.12 0.461 3.23 -- -- 0.171 -- -- 0.209 -- 28.7 7626 -- --
99.2 0.465 3.25 -- -- -- -- -- 0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.58 wind 3.0 10 < th dose dependent rect. 2 1
2 81.62 temperature 15.0 10 > th dose dependent rect. 2 1
4 81.67 wind 3.0 10 < th dose independent rect. 2 1
9 81.81 humidity 90.0 10 > th dose independent rect. 2 1
10 81.81 humidity 80.0 30 > th dose dependent rect. 2 1
11 81.81 atmosphere 1015.0 30 < th dose dependent rect. 2 1
32 81.92 temperature 10.0 30 > th dose independent rect. 2 1
34 81.92 temperature 30.0 30 < th dose independent rect. 2 1
35 81.92 humidity 50.0 30 > th dose independent rect. 2 1
38 81.92 atmosphere 995.0 30 > th dose independent rect. 2 1
39 81.92 atmosphere 1010.0 30 < th dose independent rect. 2 1
41 81.92 radiation 1.0 30 < th dose independent rect. 2 1
46 81.92 precipitation 0.1 30 < th dose independent rect. 2 1
47 81.92 temperature 10.0 30 > th dose independent rect. 3 23
48 81.92 radiation 1.0 30 < th dose dependent rect. 2 1
53 81.92 precipitation 0.1 30 < th dose dependent rect. 2 1
54 81.93 atmosphere 1005.0 10 > th dose dependent rect. 2 1
86 82.05 temperature 30.0 30 < th dose dependent rect. 2 1
88 82.06 atmosphere 1005.0 30 > th dose independent rect. 2 1
94 82.16 wind 1.0 30 > th dose independent rect. 2 1
104 82.83 wind 9.0 30 < th dose independent rect. 3 23
108 85.12 atmosphere 995.0 30 > th dose independent rect. 3 23
114 85.92 precipitation 0.1 30 < th dose independent rect. 3 23
115 85.92 precipitation 0.1 30 < th dose dependent rect. 3 23
118 86.43 temperature 25.0 90 > th dose independent rect. 1 3
122 86.83 temperature 25.0 270 > th dose independent rect. 1 1
136 87.63 radiation 1.0 43200 < th dose dependent rect. 3 1
152 88.34 wind 9.0 4320 < th dose independent rect. 3 1
155 88.35 humidity 50.0 30 > th dose independent rect. 3 23
161 88.40 temperature 10.0 1440 > th dose independent rect. 3 1
164 88.40 temperature 30.0 1440 < th dose independent rect. 3 1
168 88.40 humidity 50.0 1440 > th dose independent rect. 3 1
177 88.40 atmosphere 995.0 1440 > th dose independent rect. 3 1
178 88.40 radiation 1.0 1440 < th dose independent rect. 3 1
198 88.40 temperature 10.0 1440 > th dose independent rect. 4 23
201 88.40 radiation 1.0 1440 < th dose dependent rect. 3 1
219 88.68 wind 7.0 90 > th dose independent rect. 1 8
221 88.71 wind 7.0 90 > th dose dependent rect. 1 8
228 88.80 wind 7.0 90 > th dose independent rect. 8 1
229 88.80 wind 7.0 90 > th dose dependent rect. 8 1
258 89.23 humidity 90.0 90 < th dose independent rect. 2 1
274 89.54 atmosphere 1015.0 720 < th dose independent rect. 3 8
275 89.54 atmosphere 1015.0 30 < th dose independent rect. 3 23
313 89.86 temperature 10.0 30 > th dose dependent rect. 3 23
321 90.05 wind 9.0 720 < th dose independent rect. 3 8
336 90.27 temperature 10.0 720 > th dose independent rect. 15 8
337 90.27 temperature 10.0 720 > th dose independent rect. 23 16
344 90.35 temperature 10.0 720 > th dose independent rect. 3 8
345 90.35 atmosphere 995.0 720 > th dose independent rect. 3 8
346 90.35 temperature 10.0 720 > th dose independent rect. 11 16
356 90.49 atmosphere 1015.0 1440 < th dose independent rect. 3 1
398 90.76 precipitation 0.1 720 < th dose independent rect. 3 8
400 90.76 precipitation 0.1 720 < th dose dependent rect. 3 8
405 90.84 wind 1.0 30 > th dose dependent rect. 2 1
407 90.85 humidity 90.0 90 < th dose independent rect. 1 4
408 90.87 atmosphere 995.0 720 > th dose independent rect. 23 16
414 90.95 humidity 50.0 720 > th dose independent rect. 3 8
418 91.00 wind 1.0 30 < th dose independent rect. 17 10
420 91.00 wind 1.0 10 < th dose independent rect. 14 13
422 91.01 wind 1.0 30 < th dose independent rect. 21 6
456 91.13 precipitation 0.1 720 < th dose independent rect. 23 16
459 91.13 precipitation 0.1 720 < th dose dependent rect. 23 16
475 91.26 precipitation 0.1 720 < th dose independent rect. 15 8
476 91.26 precipitation 0.1 720 < th dose dependent rect. 15 8
490 91.38 radiation 20.0 270 > th dose dependent rect. 6 1
506 91.39 wind 3.0 30 < th dose dependent rect. 22 5
512 91.48 wind 1.0 10 < th dose independent rect. 7 20
518 91.55 radiation 20.0 270 > th dose independent rect. 6 1
534 91.58 radiation 40.0 720 < th dose independent rect. 15 8
537 91.60 wind 9.0 30 < th dose dependent rect. 3 23
543 91.65 wind 9.0 720 < th dose independent rect. 15 8
549 91.69 temperature 25.0 720 > th dose independent rect. 4 5
559 91.75 radiation 40.0 90 > th dose dependent rect. 8 1
579 91.77 wind 9.0 720 < th dose dependent rect. 2 1
602 91.89 temperature 25.0 720 > th dose dependent rect. 4 4
603 91.89 wind 3.0 30 < th dose dependent rect. 13 14
607 91.92 precipitation 0.1 720 < th dose independent rect. 11 16
611 91.92 precipitation 0.1 720 < th dose dependent rect. 11 16
614 91.94 temperature 25.0 270 > th dose independent rect. 19 8
640 91.95 wind 3.0 30 < th dose dependent rect. 20 7
644 91.96 wind 3.0 30 < th dose dependent rect. 15 12
647 91.97 temperature 30.0 10 < th dose dependent rect. 9 1
673 92.09 temperature 10.0 720 > th dose dependent rect. 3 3
688 92.14 humidity 80.0 720 > th dose dependent rect. 3 1
699 92.17 temperature 10.0 720 > th dose dependent rect. 3 1
723 92.24 wind 9.0 720 < th dose independent rect. 23 16
741 92.27 humidity 90.0 720 > th dose independent rect. 3 1
754 92.29 temperature 15.0 1440 > th dose independent rect. 10 1
765 92.31 wind 9.0 30 < th dose dependent rect. 15 12
773 92.34 atmosphere 995.0 720 > th dose independent rect. 15 8
775 92.35 radiation 20.0 90 > th dose independent rect. 8 1
783 92.37 radiation 20.0 90 > th dose independent rect. 6 4
814 92.41 atmosphere 1000.0 10 > th dose independent rect. 14 12
872 92.50 humidity 90.0 30 < th dose independent rect. 9 1
878 92.52 temperature 25.0 30 > th dose independent rect. 24 11
893 92.54 temperature 10.0 720 > th dose dependent rect. 3 6
898 92.55 radiation 40.0 30 < th dose independent rect. 14 12
904 92.56 radiation 10.0 43200 < th dose dependent rect. 23 1
936 92.62 atmosphere 995.0 30 > th dose independent rect. 10 23
937 92.62 radiation 40.0 30 < th dose independent rect. 3 23
944 92.65 temperature 10.0 43200 > th dose independent rect. 10 1
957 92.68 wind 1.0 10 > th dose independent rect. 23 23
958 92.68 radiation 10.0 10 < th dose independent rect. 3 23