BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0249400 Os09g0249400|AK063577
(154 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0249400 Protein of unknown function DUF588 family protein 294 2e-80
Os01g0847300 Protein of unknown function DUF588 family protein 212 1e-55
Os05g0456500 Protein of unknown function DUF588 family protein 202 6e-53
Os03g0206600 Protein of unknown function DUF588 family protein 105 2e-23
Os10g0343200 Protein of unknown function DUF588 family protein 93 7e-20
Os03g0767900 Protein of unknown function DUF588 family protein 84 5e-17
>Os09g0249400 Protein of unknown function DUF588 family protein
Length = 154
Score = 294 bits (752), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/154 (95%), Positives = 147/154 (95%)
Query: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60
MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL
Sbjct: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60
Query: 61 ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFXXXXXXXGVTILFERDVHFCRMYPQ 120
ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSF GVTILFERDVHFCRMYPQ
Sbjct: 61 ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFAAASASAGVTILFERDVHFCRMYPQ 120
Query: 121 LSCGRYELSVILAFITWSFIATSAVSMFWLLASL 154
LSCGRYELSVILAFITWSFIATSAVSMFWLLASL
Sbjct: 121 LSCGRYELSVILAFITWSFIATSAVSMFWLLASL 154
>Os01g0847300 Protein of unknown function DUF588 family protein
Length = 153
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 125/154 (81%), Gaps = 1/154 (0%)
Query: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60
M+++ GSPGTWSG+SLRV Q VFA ASV A ASA GF+ YTAFCYLIASMGLQ LWS GL
Sbjct: 1 MRELAGSPGTWSGLSLRVGQLVFAAASVCATASALGFAAYTAFCYLIASMGLQALWSLGL 60
Query: 61 ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFXXXXXXXGVTILFERDVHFCRMYPQ 120
ACLD Y+L+ K+DLH+ VL+SLFVVGDWVTAILSF GV +LF+RD++ CR PQ
Sbjct: 61 ACLDCYALKFKKDLHSAVLLSLFVVGDWVTAILSFAASCSAAGVVVLFDRDIYACR-NPQ 119
Query: 121 LSCGRYELSVILAFITWSFIATSAVSMFWLLASL 154
L CGR+EL++ AF++W+F ATSA+ MFWLLASL
Sbjct: 120 LPCGRFELAIACAFLSWAFSATSALVMFWLLASL 153
>Os05g0456500 Protein of unknown function DUF588 family protein
Length = 155
Score = 202 bits (515), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 97/146 (66%), Positives = 117/146 (80%)
Query: 8 PGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGLACLDIYS 67
PGTW G+++RV Q FAGAS+ MAS GF+NYTAFCYLIASMGLQ LWS GLACLD+Y+
Sbjct: 9 PGTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVYA 68
Query: 68 LQTKRDLHNPVLVSLFVVGDWVTAILSFXXXXXXXGVTILFERDVHFCRMYPQLSCGRYE 127
L KRDL+N +LVSLFV+GDWVTA+LSF GV +LF+RDV FCR YPQL CGR+E
Sbjct: 69 LTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYPQLPCGRFE 128
Query: 128 LSVILAFITWSFIATSAVSMFWLLAS 153
L+V LAF++W+ ATSA+ MF LLA+
Sbjct: 129 LAVALAFLSWALSATSAIIMFCLLAA 154
>Os03g0206600 Protein of unknown function DUF588 family protein
Length = 178
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 92/153 (60%), Gaps = 3/153 (1%)
Query: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60
MKD+ G PGT G+ LR++Q FA ++ MAS F + T+FC+L+A+ LQ LWSF L
Sbjct: 28 MKDLPGMPGTAGGLGLRLAQFAFAAVALAVMASTNDFPSVTSFCFLVAAAILQCLWSFSL 87
Query: 61 ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFXXXXXXXGVTILFERDVHFCRMYPQ 120
A +DIY+L KR L N V LF +GD +TA L+F G+T+L + D+ C +
Sbjct: 88 AIVDIYALLVKRCLRNRRAVCLFAIGDGITAALTFSAACASSGITVLIDNDLDLCS---E 144
Query: 121 LSCGRYELSVILAFITWSFIATSAVSMFWLLAS 153
C +E + +AF++W ++ S + FW +AS
Sbjct: 145 NHCASFESATAMAFLSWFALSPSFLLNFWSMAS 177
>Os10g0343200 Protein of unknown function DUF588 family protein
Length = 203
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 89/153 (58%), Gaps = 3/153 (1%)
Query: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60
MKD G+PGT G+ LR+ Q FA A++ MAS F + +AFCYL+A+ LQ LWS L
Sbjct: 53 MKDPPGAPGTPGGLGLRLVQAFFAAAALAVMASTDDFPSVSAFCYLVAAAILQCLWSLSL 112
Query: 61 ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFXXXXXXXGVTILFERDVHFCRMYPQ 120
A +DIY+L KR L NP V +F +GD +T L+ G+T+L D++ C
Sbjct: 113 AVVDIYALLVKRSLRNPQAVCIFTIGDGITGTLTLGAACASAGITVLIGNDLNIC---AN 169
Query: 121 LSCGRYELSVILAFITWSFIATSAVSMFWLLAS 153
C +E + +AFI+W +A S V FW +AS
Sbjct: 170 NHCASFETATAMAFISWFALAPSCVLNFWSMAS 202
>Os03g0767900 Protein of unknown function DUF588 family protein
Length = 156
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Query: 14 MSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGLACLDIYSLQTKRD 73
+ LRV Q VF+ AS++ M+ F +YTAFC+L+ MGL + WS LA +D+YS+
Sbjct: 18 LGLRVGQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPWSCTLAMIDVYSILVGCP 77
Query: 74 LHNPVLVSLFVVGDWVTAILSFXXXXXXXGVTILFERDVHFCRMYPQLSCGRYELSVILA 133
L P ++ + V+GDWV AILS V L + H P+ CGRY+LS ++A
Sbjct: 78 LRVPGVMVIVVIGDWVLAILSLAAASSSAAVIDLLLQ-FHGSHCSPRF-CGRYQLSAMMA 135
Query: 134 FITWSFIATSAVSMFWLLAS 153
F++W A S++ W +AS
Sbjct: 136 FLSWFLTAASSLFNLWFIAS 155
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.138 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,414,412
Number of extensions: 132725
Number of successful extensions: 344
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 6
Length of query: 154
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 62
Effective length of database: 12,232,113
Effective search space: 758391006
Effective search space used: 758391006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 151 (62.8 bits)