Os03g0767900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF588 family protein.
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Os03g0767900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF588 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.73 | 0.36 | 11.2 | 0.000849 | 0.427 | -0.822 | -0.0531 | -2.44 | 0.257 | 15.2 | 19.9 | 129 | -- | -- |
| 64.97 | 0.375 | 11.3 | -0.00632 | 0.393 | -0.66 | -0.901 | -- | 0.248 | 14.8 | 14.54 | 125 | -- | -- |
| 58.72 | 0.357 | 11.2 | 0.00686 | 0.443 | -0.813 | -- | -2.35 | 0.26 | 15.1 | 17.45 | 128 | -- | -- |
| 67.28 | 0.382 | 11.3 | -0.0239 | 0.405 | -0.602 | -- | -- | 0.249 | 15.3 | 13.69 | 127 | -- | -- |
| 65.29 | 0.376 | 11.2 | -0.00923 | -- | -0.697 | -- | -2.73 | 0.251 | -- | 33.89 | 129 | -- | -- |
| 71.8 | 0.397 | 11.3 | -0.0105 | 0.17 | -- | -0.782 | -- | 0.222 | 15.1 | -- | -- | -- | -- |
| 72.67 | 0.399 | 11.3 | -0.027 | 0.23 | -- | -- | -- | 0.218 | 17.6 | -- | -- | -- | -- |
| 72.93 | 0.399 | 11.3 | -0.0331 | -- | -0.305 | -- | -- | 0.208 | -- | 13.69 | 127 | -- | -- |
| 67.3 | 0.382 | 11.3 | -- | 0.407 | -0.603 | -- | -- | 0.251 | 15.3 | 13.69 | 127 | -- | -- |
| 75.42 | 0.406 | 11.3 | -0.0344 | -- | -- | -- | -- | 0.213 | -- | -- | -- | -- | -- |
| 72.69 | 0.399 | 11.3 | -- | 0.231 | -- | -- | -- | 0.221 | 17.6 | -- | -- | -- | -- |
| 72.96 | 0.399 | 11.3 | -- | -- | -0.305 | -- | -- | 0.212 | -- | 13.69 | 127 | -- | -- |
| 75.45 | 0.405 | 11.3 | -- | -- | -- | -- | -- | 0.216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.48 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 28 | 53.90 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 30 | 54.03 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 34 | 54.15 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 8 | 6 |
| 42 | 54.32 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 48 | 54.43 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 4 | 17 |
| 50 | 54.47 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 73 | 54.97 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 91 | 55.20 | radiation | 1.0 | 270 | < th | dose dependent | sin | 14 | NA |
| 115 | 55.57 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 119 | 55.63 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 21 | 19 |
| 124 | 55.69 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 19 |
| 126 | 55.74 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 128 | 55.75 | radiation | 1.0 | 270 | < th | dose independent | sin | 14 | NA |
| 142 | 55.94 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 144 | 55.95 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 146 | 55.96 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 174 | 56.20 | radiation | 1.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 177 | 56.23 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 183 | 56.33 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 184 | 56.34 | humidity | 60.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 188 | 56.39 | radiation | 1.0 | 270 | > th | dose independent | sin | 13 | NA |
| 198 | 56.49 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 19 |
| 223 | 56.64 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 225 | 56.65 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 20 |
| 226 | 56.66 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 232 | 56.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 236 | 56.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 254 | 56.81 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 4 |
| 269 | 56.88 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 271 | 56.90 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 278 | 56.91 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 281 | 56.93 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 283 | 56.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 18 |
| 284 | 56.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 285 | 56.95 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 302 | 57.05 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 21 |
| 326 | 57.13 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 336 | 57.15 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 353 | 57.24 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 354 | 57.24 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 23 |
| 362 | 57.30 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 368 | 57.33 | radiation | 40.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 370 | 57.34 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 3 |
| 388 | 57.40 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 394 | 57.43 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 5 |
| 423 | 57.48 | radiation | 1.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 444 | 57.51 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 4 | 17 |
| 445 | 57.52 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 451 | 57.52 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 469 | 57.57 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 472 | 57.58 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 477 | 57.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 5 |
| 485 | 57.63 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 21 |
| 496 | 57.67 | radiation | 40.0 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 499 | 57.67 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 16 | 14 |
| 501 | 57.68 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 502 | 57.68 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 503 | 57.68 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 504 | 57.68 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 527 | 57.69 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 21 | 19 |
| 531 | 57.70 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 535 | 57.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 6 |
| 538 | 57.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 6 |
| 540 | 57.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 550 | 57.75 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 558 | 57.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 560 | 57.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 565 | 57.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 584 | 57.80 | radiation | 40.0 | 90 | < th | dose independent | rect. | 15 | 20 |
| 601 | 57.85 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 605 | 57.85 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 679 | 57.96 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 706 | 58.00 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 719 | 58.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 3 |
| 723 | 58.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 3 |
| 808 | 58.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 5 |
| 811 | 58.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 5 |
| 813 | 58.19 | temperature | 25.0 | 90 | > th | dose independent | rect. | 16 | 4 |
| 832 | 58.21 | wind | 3.0 | 270 | > th | dose independent | rect. | 15 | 3 |
| 843 | 58.23 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 16 | 3 |
| 900 | 58.35 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 901 | 58.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 9 |
| 903 | 58.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 908 | 58.36 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 911 | 58.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 1 |
| 912 | 58.37 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 3 |
| 913 | 58.37 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 16 | 5 |
| 914 | 58.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 915 | 58.37 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 16 | 5 |
| 937 | 58.40 | temperature | 15.0 | 90 | > th | dose independent | rect. | 16 | 17 |
| 966 | 58.44 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 995 | 58.46 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 3 |