BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0767900 Os03g0767900|AK106933
         (156 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0767900  Protein of unknown function DUF588 family protein   233   5e-62
Os09g0249400  Protein of unknown function DUF588 family protein    78   3e-15
Os01g0847300  Protein of unknown function DUF588 family protein    73   1e-13
Os05g0456500  Protein of unknown function DUF588 family protein    71   4e-13

>Os03g0767900 Protein of unknown function DUF588 family protein
          Length = 156

 Score =  233 bits (593), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 121/156 (77%)

Query: 1   MENRERXXXXXXXXXXXXXXRVGQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPW 60
           MENRER              RVGQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPW
Sbjct: 1   MENRERAGAGAVGSAGSLGLRVGQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPW 60

Query: 61  SCTLAMIDVYSILVGCPLRVPGVMVIVVIGDWXXXXXXXXXXXXXXXXXXXXXQFHGSHC 120
           SCTLAMIDVYSILVGCPLRVPGVMVIVVIGDW                     QFHGSHC
Sbjct: 61  SCTLAMIDVYSILVGCPLRVPGVMVIVVIGDWVLAILSLAAASSSAAVIDLLLQFHGSHC 120

Query: 121 SPRFCGRYQLSAMMAFLSWFLTAASSLFNLWFIASR 156
           SPRFCGRYQLSAMMAFLSWFLTAASSLFNLWFIASR
Sbjct: 121 SPRFCGRYQLSAMMAFLSWFLTAASSLFNLWFIASR 156



>Os09g0249400 Protein of unknown function DUF588 family protein
          Length = 154

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 2/137 (1%)

Query: 21  RVGQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPWSCTLAMIDVYSILVGCPLRV 80
           RV Q VF+ AS++ M+    F +YTAFC+L+  MGL + WS  LA +D+YS+     L  
Sbjct: 17  RVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGLACLDIYSLQTKRDLHN 76

Query: 81  PGVMVIVVIGDWXXXXXXXXXXXXXXXXXXXXXQ-FHGSHCSPRF-CGRYQLSAMMAFLS 138
           P ++ + V+GDW                     +  H     P+  CGRY+LS ++AF++
Sbjct: 77  PVLVSLFVVGDWVTAILSFAAASASAGVTILFERDVHFCRMYPQLSCGRYELSVILAFIT 136

Query: 139 WFLTAASSLFNLWFIAS 155
           W   A S++   W +AS
Sbjct: 137 WSFIATSAVSMFWLLAS 153



>Os01g0847300 Protein of unknown function DUF588 family protein
          Length = 153

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 21  RVGQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPWSCTLAMIDVYSILVGCPLRV 80
           RVGQ VF++AS+   +  + F +YTAFC+L+  MGL   WS  LA +D Y++     L  
Sbjct: 17  RVGQLVFAAASVCATASALGFAAYTAFCYLIASMGLQALWSLGLACLDCYALKFKKDLHS 76

Query: 81  PGVMVIVVIGDWXXXXXXXXXXXXXXXXXXXXXQFHGSHCSPRF-CGRYQLSAMMAFLSW 139
             ++ + V+GDW                     +   +  +P+  CGR++L+   AFLSW
Sbjct: 77  AVLLSLFVVGDWVTAILSFAASCSAAGVVVLFDRDIYACRNPQLPCGRFELAIACAFLSW 136

Query: 140 FLTAASSLFNLWFIAS 155
             +A S+L   W +AS
Sbjct: 137 AFSATSALVMFWLLAS 152



>Os05g0456500 Protein of unknown function DUF588 family protein
          Length = 155

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 68/130 (52%), Gaps = 4/130 (3%)

Query: 21  RVGQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPWSCTLAMIDVYSILVGCPLRV 80
           RVGQ  F+ AS+  M+ G  F +YTAFC+L+  MGL   WS  LA +DVY++ V   L  
Sbjct: 18  RVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVYALTVKRDLNN 77

Query: 81  PGVMVIVVIGDWXXXXXXXXXXXXXXXXXXXXXQFHGSHCS--PRF-CGRYQLSAMMAFL 137
             ++ + VIGDW                     +     C   P+  CGR++L+  +AFL
Sbjct: 78  ALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKR-DVLFCRRYPQLPCGRFELAVALAFL 136

Query: 138 SWFLTAASSL 147
           SW L+A S++
Sbjct: 137 SWALSATSAI 146



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.334    0.141    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,432,175
Number of extensions: 90976
Number of successful extensions: 290
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 4
Length of query: 156
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 64
Effective length of database: 12,232,113
Effective search space: 782855232
Effective search space used: 782855232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 151 (62.8 bits)