Os05g0456500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF588 family protein.
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Os05g0456500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF588 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.88 | 0.364 | 9.63 | -0.0661 | 0.287 | -1.45 | -1.73 | 1.61 | 0.104 | 15.7 | 25.13 | 1381 | -- | -- |
| 61 | 0.364 | 9.59 | 0.336 | 0.156 | -1.23 | -1.52 | -- | 0.14 | 15.2 | 23.68 | 1659 | -- | -- |
| 68.17 | 0.385 | 9.63 | -0.074 | 0.305 | -1.48 | -- | 1.51 | 0.0894 | 14.4 | 25.2 | 1353 | -- | -- |
| 67.32 | 0.382 | 9.58 | 0.354 | 0.148 | -1.18 | -- | -- | 0.21 | 12.6 | 23.2 | 1846 | -- | -- |
| 71.32 | 0.393 | 9.63 | -0.0743 | -- | -1.44 | -- | 1.38 | 0.109 | -- | 24.76 | 1496 | -- | -- |
| 117.4 | 0.508 | 9.47 | 0.862 | 0.109 | -- | -1.72 | -- | 0.729 | 16.1 | -- | -- | -- | -- |
| 125.52 | 0.525 | 9.47 | 0.843 | 0.112 | -- | -- | -- | 0.72 | 13.8 | -- | -- | -- | -- |
| 68.48 | 0.385 | 9.59 | 0.356 | -- | -1.17 | -- | -- | 0.213 | -- | 23.2 | 1794 | -- | -- |
| 70 | 0.39 | 9.6 | -- | 0.202 | -1.23 | -- | -- | 0.167 | 11.8 | 23.8 | 2060 | -- | -- |
| 126.29 | 0.525 | 9.47 | 0.838 | -- | -- | -- | -- | 0.717 | -- | -- | -- | -- | -- |
| 144.23 | 0.562 | 9.49 | -- | 0.0971 | -- | -- | -- | 0.626 | 13.6 | -- | -- | -- | -- |
| 71.72 | 0.394 | 9.6 | -- | -- | -1.19 | -- | -- | 0.152 | -- | 23.21 | 1794 | -- | -- |
| 144.81 | 0.562 | 9.49 | -- | -- | -- | -- | -- | 0.624 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.19 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 6 | 20 |
| 3 | 59.21 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 6 | 19 |
| 15 | 59.60 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 22 | 59.69 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 28 | 59.77 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 42 | 59.94 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 51 | 60.03 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 83 | 60.29 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 103 | 60.42 | temperature | 25.0 | 1440 | < th | dose independent | no | NA | NA |
| 113 | 60.47 | temperature | 25.0 | 1440 | < th | dose independent | sin | 16 | NA |
| 125 | 60.54 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 140 | 60.63 | temperature | 25.0 | 1440 | > th | dose independent | no | NA | NA |
| 143 | 60.64 | temperature | 25.0 | 1440 | > th | dose independent | sin | 16 | NA |
| 151 | 60.67 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 159 | 60.71 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 164 | 60.72 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 181 | 60.83 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 254 | 61.20 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 273 | 61.30 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 324 | 61.53 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 327 | 61.54 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 411 | 61.76 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 416 | 61.78 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 449 | 61.93 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 458 | 61.98 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 666 | 62.91 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 689 | 63.02 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 716 | 63.14 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 848 | 63.66 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 858 | 63.69 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 859 | 63.69 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 874 | 63.76 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 875 | 63.77 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 880 | 63.78 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 889 | 63.80 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 898 | 63.82 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 910 | 63.86 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 911 | 63.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 936 | 63.91 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 957 | 64.04 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 965 | 64.07 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 7 |
| 969 | 64.08 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 970 | 64.08 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 991 | 64.15 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 7 |