BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0456500 Os05g0456500|AK103232
         (155 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0456500  Protein of unknown function DUF588 family protein   304   2e-83
Os01g0847300  Protein of unknown function DUF588 family protein   211   2e-55
Os09g0249400  Protein of unknown function DUF588 family protein   202   6e-53
Os03g0206600  Protein of unknown function DUF588 family protein   102   8e-23
Os10g0343200  Protein of unknown function DUF588 family protein    94   4e-20
Os03g0767900  Protein of unknown function DUF588 family protein    79   2e-15

>Os05g0456500 Protein of unknown function DUF588 family protein
          Length = 155

 Score =  304 bits (778), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MWEVAWWRPGTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLG 60
           MWEVAWWRPGTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLG
Sbjct: 1   MWEVAWWRPGTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLG 60

Query: 61  LACLDVYALTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYP 120
           LACLDVYALTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYP
Sbjct: 61  LACLDVYALTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYP 120

Query: 121 QLPCGRFELAVALAFLSWALSATSAIIMFCLLAAF 155
           QLPCGRFELAVALAFLSWALSATSAIIMFCLLAAF
Sbjct: 121 QLPCGRFELAVALAFLSWALSATSAIIMFCLLAAF 155



>Os01g0847300 Protein of unknown function DUF588 family protein
          Length = 153

 Score =  211 bits (536), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/146 (73%), Positives = 125/146 (85%), Gaps = 1/146 (0%)

Query: 9   PGTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVYA 68
           PGTW GL++RVGQ+ FA AS+   AS  GFA YTAFCYLIASMGLQ+LWSLGLACLD YA
Sbjct: 8   PGTWSGLSLRVGQLVFAAASVCATASALGFAAYTAFCYLIASMGLQALWSLGLACLDCYA 67

Query: 69  LTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYPQLPCGRFE 128
           L  K+DL++A+L+SLFV+GDWVTA+LSFAASCSA GV+VLF RD+  CR  PQLPCGRFE
Sbjct: 68  LKFKKDLHSAVLLSLFVVGDWVTAILSFAASCSAAGVVVLFDRDIYACRN-PQLPCGRFE 126

Query: 129 LAVALAFLSWALSATSAIIMFCLLAA 154
           LA+A AFLSWA SATSA++MF LLA+
Sbjct: 127 LAIACAFLSWAFSATSALVMFWLLAS 152



>Os09g0249400 Protein of unknown function DUF588 family protein
          Length = 154

 Score =  202 bits (515), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 99/146 (67%), Positives = 122/146 (83%)

Query: 9   PGTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVYA 68
           PGTW G+++RV Q  FAGAS+  MAS  GF+NYTAFCYLIASMGLQ LWS GLACLD+Y+
Sbjct: 8   PGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGLACLDIYS 67

Query: 69  LTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYPQLPCGRFE 128
           L  KRDL+N +LVSLFV+GDWVTA+LSFAA+ ++ GV +LF+RDV FCR YPQL CGR+E
Sbjct: 68  LQTKRDLHNPVLVSLFVVGDWVTAILSFAAASASAGVTILFERDVHFCRMYPQLSCGRYE 127

Query: 129 LAVALAFLSWALSATSAIIMFCLLAA 154
           L+V LAF++W+  ATSA+ MF LLA+
Sbjct: 128 LSVILAFITWSFIATSAVSMFWLLAS 153



>Os03g0206600 Protein of unknown function DUF588 family protein
          Length = 178

 Score =  102 bits (255), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 3/130 (2%)

Query: 9   PGTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVYA 68
           PGT GGL +R+ Q AFA  ++ VMAS   F + T+FC+L+A+  LQ LWS  LA +D+YA
Sbjct: 35  PGTAGGLGLRLAQFAFAAVALAVMASTNDFPSVTSFCFLVAAAILQCLWSFSLAIVDIYA 94

Query: 69  LTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYPQLPCGRFE 128
           L VKR L N   V LF IGD +TA L+F+A+C++ G+ VL   D+  C    +  C  FE
Sbjct: 95  LLVKRCLRNRRAVCLFAIGDGITAALTFSAACASSGITVLIDNDLDLCS---ENHCASFE 151

Query: 129 LAVALAFLSW 138
            A A+AFLSW
Sbjct: 152 SATAMAFLSW 161



>Os10g0343200 Protein of unknown function DUF588 family protein
          Length = 203

 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 69/116 (59%), Gaps = 3/116 (2%)

Query: 34  SGAGFANYTAFCYLIASMGLQSLWSLGLACLDVYALTVKRDLNNALLVSLFVIGDWVTAL 93
           S   F + +AFCYL+A+  LQ LWSL LA +D+YAL VKR L N   V +F IGD +T  
Sbjct: 85  STDDFPSVSAFCYLVAAAILQCLWSLSLAVVDIYALLVKRSLRNPQAVCIFTIGDGITGT 144

Query: 94  LSFAASCSAGGVMVLFKRDVLFCRRYPQLPCGRFELAVALAFLSWALSATSAIIMF 149
           L+  A+C++ G+ VL   D+  C       C  FE A A+AF+SW   A S ++ F
Sbjct: 145 LTLGAACASAGITVLIGNDLNICANN---HCASFETATAMAFISWFALAPSCVLNF 197



>Os03g0767900 Protein of unknown function DUF588 family protein
          Length = 156

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 84/133 (63%), Gaps = 4/133 (3%)

Query: 15  LAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVYALTVKRD 74
           L +RVGQ  F+ AS+  M+ G  F +YTAFC+L+  MGL   WS  LA +DVY++ V   
Sbjct: 18  LGLRVGQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPWSCTLAMIDVYSILVGCP 77

Query: 75  LNNALLVSLFVIGDWVTALLSFAASCSAGGVM-VLFKRDVLFCRRYPQLPCGRFELAVAL 133
           L    ++ + VIGDWV A+LS AA+ S+  V+ +L +     C   P+  CGR++L+  +
Sbjct: 78  LRVPGVMVIVVIGDWVLAILSLAAASSSAAVIDLLLQFHGSHCS--PRF-CGRYQLSAMM 134

Query: 134 AFLSWALSATSAI 146
           AFLSW L+A S++
Sbjct: 135 AFLSWFLTAASSL 147



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.139    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,075,543
Number of extensions: 179079
Number of successful extensions: 580
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 6
Length of query: 155
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 63
Effective length of database: 12,232,113
Effective search space: 770623119
Effective search space used: 770623119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 151 (62.8 bits)