BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0456500 Os05g0456500|AK103232
(155 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G53850.1 | chr3:19948262-19948994 REVERSE LENGTH=155 178 9e-46
AT5G02060.1 | chr5:404908-405774 FORWARD LENGTH=153 165 8e-42
AT3G23200.1 | chr3:8281659-8282603 FORWARD LENGTH=153 129 7e-31
AT2G28370.1 | chr2:12132092-12133447 FORWARD LENGTH=180 125 8e-30
AT2G37200.1 | chr2:15622098-15623047 REVERSE LENGTH=181 88 2e-18
AT4G37235.1 | chr4:17518052-17519671 FORWARD LENGTH=153 85 1e-17
AT3G50810.1 | chr3:18889002-18889868 REVERSE LENGTH=155 67 5e-12
AT1G49405.1 | chr1:18284335-18284947 REVERSE LENGTH=153 66 8e-12
>AT3G53850.1 | chr3:19948262-19948994 REVERSE LENGTH=155
Length = 154
Score = 178 bits (452), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 88/146 (60%), Positives = 113/146 (77%)
Query: 9 PGTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVYA 68
PGT GL +R+GQ A A ASIGVM S F+ +TAFCYLIASMGLQ LWS GLACLDVYA
Sbjct: 8 PGTVCGLLLRIGQCASAAASIGVMVSAKEFSVHTAFCYLIASMGLQLLWSFGLACLDVYA 67
Query: 69 LTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYPQLPCGRFE 128
L K+DL N +LVSLFV+GDWVTA+LS AA+CS+ GV+VL+++D+ +C Q PC R+E
Sbjct: 68 LRGKKDLQNPILVSLFVVGDWVTAMLSLAAACSSAGVVVLYEKDIKYCNTQSQYPCLRYE 127
Query: 129 LAVALAFLSWALSATSAIIMFCLLAA 154
+AVAL+F++W A S+ + F +LA+
Sbjct: 128 VAVALSFVTWIQIAVSSHVTFWILAS 153
>AT5G02060.1 | chr5:404908-405774 FORWARD LENGTH=153
Length = 152
Score = 165 bits (418), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 109/144 (75%)
Query: 9 PGTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVYA 68
PGT GL +R+GQ A A ASIGVM S F+NYTAFC+L+ASMGLQ +WS GLACLDVYA
Sbjct: 8 PGTMSGLILRLGQCATAAASIGVMVSSYDFSNYTAFCFLVASMGLQLIWSFGLACLDVYA 67
Query: 69 LTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYPQLPCGRFE 128
+ K DL + +L+SLF +GDWVTALL+ AA+CS+ GV VLF +D FCR+ P L C RF+
Sbjct: 68 IRRKSDLRSPILLSLFTVGDWVTALLALAAACSSAGVTVLFTKDTEFCRQQPALSCDRFQ 127
Query: 129 LAVALAFLSWALSATSAIIMFCLL 152
++V L+F +W L+A S+ MF +L
Sbjct: 128 ISVGLSFFNWFLAAISSHTMFWIL 151
>AT3G23200.1 | chr3:8281659-8282603 FORWARD LENGTH=153
Length = 152
Score = 129 bits (324), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 8 RPGTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVY 67
PGT GL +R+ Q FA SI M + GF ++TAFCYLIA+MGLQ +WS GLA LD +
Sbjct: 7 TPGTLTGLVLRISQCVFAAGSISYMVTSGGFFSFTAFCYLIAAMGLQVIWSFGLAILDTF 66
Query: 68 ALTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYPQLPCGRF 127
AL K+ L + +LVSLFV+GDWVT+ LS A + S+ G+ VL+ D+ C + C ++
Sbjct: 67 ALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGASSSAGITVLYFGDLGSCSFEAE--CWKY 124
Query: 128 ELAVALAFLSWALSATSAIIMFCLLAA 154
+L+VALAFL W A S++ LLA+
Sbjct: 125 QLSVALAFLCWITIAVSSLTTLWLLAS 151
>AT2G28370.1 | chr2:12132092-12133447 FORWARD LENGTH=180
Length = 179
Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 3/130 (2%)
Query: 9 PGTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVYA 68
PGT GLA+R Q FA A++ VMAS + F + TAFCYL+A+ GLQSLWSL LA +DVYA
Sbjct: 36 PGTLLGLALRFFQFLFAAAALCVMASTSDFPSVTAFCYLVAATGLQSLWSLALAMVDVYA 95
Query: 69 LTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYPQLPCGRFE 128
+ VKR L N LVSLF IGD VT+ L+FAA+C++ G+ VL D+ C Q C +FE
Sbjct: 96 IMVKRSLQNRRLVSLFAIGDGVTSTLTFAAACASAGITVLIDNDLNSCA---QNHCVQFE 152
Query: 129 LAVALAFLSW 138
+ ALAF+SW
Sbjct: 153 TSTALAFISW 162
>AT2G37200.1 | chr2:15622098-15623047 REVERSE LENGTH=181
Length = 180
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 4/141 (2%)
Query: 9 PGTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVYA 68
PGT GGL +R+ Q A S+ VM + + F + TAFC L+ ++ LQSLWSL L +D YA
Sbjct: 38 PGTTGGLILRLSQFVPALISVSVMVTTSDFRSATAFCCLVLAVSLQSLWSLSLFIIDAYA 97
Query: 69 LTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYPQLPCGRFE 128
L V+R L N +V F IGD VT+ L+FAA+ ++ G+ VL D+ C C RFE
Sbjct: 98 LLVRRSLRNHSVVQCFTIGDGVTSTLTFAAASASAGITVLIN-DLGQCNVN---HCTRFE 153
Query: 129 LAVALAFLSWALSATSAIIMF 149
A A+AF+SW + S I+ F
Sbjct: 154 TATAMAFISWFAVSPSFILNF 174
>AT4G37235.1 | chr4:17518052-17519671 FORWARD LENGTH=153
Length = 152
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 10 GTWGGLAMRVGQVAFAGASIGVM--ASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVY 67
GT +R+GQ F+ AS+ M F YT FCYL+ MGL + WS+ LA ++ Y
Sbjct: 9 GTSSSFVLRLGQTLFSSASLLFMCFNDDEDFYAYTTFCYLVTVMGLVTPWSVTLALMEAY 68
Query: 68 ALTVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYPQLPCGRF 127
++ VK+ A ++S+ V GD+V + LS +CS V VL + C R+
Sbjct: 69 SILVKKLPMQATVISVIVAGDFVLSFLSLGGACSTASVAVLLMDA-------GEKQCDRY 121
Query: 128 ELAVALAFLSWALSATSAIIMFCLLAA 154
+L+ +AFLS LS S FCLL +
Sbjct: 122 KLSATMAFLSSFLSFASTFFNFCLLPS 148
>AT3G50810.1 | chr3:18889002-18889868 REVERSE LENGTH=155
Length = 154
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 7/145 (4%)
Query: 9 PGTWG---GLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLD 65
PG++G A+R GQ F+ AS+ M F ++T FCYL M + + WS+ LA D
Sbjct: 5 PGSFGTSASFALRFGQTIFSAASLIFMCFDFDFYDFTTFCYLAMVMAIVTPWSILLALTD 64
Query: 66 VYALTVKRDLNNALLVSLFVIGDWVTALLSFAASCS-AGGVMVLFKRDVLFCRRYPQLPC 124
Y++ VK ++S+ GD+V + LS +C+ A +L D C C
Sbjct: 65 TYSVLVKLLPQELRVLSIVFAGDFVLSFLSLGGACAVASATELLASADGKICDGS---LC 121
Query: 125 GRFELAVALAFLSWALSATSAIIMF 149
+++++ ALAFL W L SA+ F
Sbjct: 122 IQYQVSAALAFLCWFLLLASALFNF 146
>AT1G49405.1 | chr1:18284335-18284947 REVERSE LENGTH=153
Length = 152
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 10 GTWGGLAMRVGQVAFAGASIGVMASGAGFANYTAFCYLIASMGLQSLWSLGLACLDVYAL 69
GT L++R+GQ+ A S+ M G F +TAFCYL+ M L W+L LA +D+Y +
Sbjct: 9 GTTASLSLRLGQMVLAFGSLLFMTIGVRFYQFTAFCYLVTIMSLAIPWNLTLAMVDIYCV 68
Query: 70 TVKRDLNNALLVSLFVIGDWVTALLSFAASCSAGGVMVLFKRDVLFCRRYPQLPCGRFEL 129
+++ ++ IGDWV ++L+ A++ SA V+ + + + C P C R++
Sbjct: 69 ILQQPFQKPRILLAISIGDWVVSVLALASASSAASVVDILRSNESSC---PPTICNRYQF 125
Query: 130 AVALAF 135
A LAF
Sbjct: 126 AATLAF 131
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.139 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,091,827
Number of extensions: 105769
Number of successful extensions: 316
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 8
Length of query: 155
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 65
Effective length of database: 8,639,129
Effective search space: 561543385
Effective search space used: 561543385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 107 (45.8 bits)