BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0248300 Os09g0248300|AK099919
(542 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0248300 Frigida-like family protein 1090 0.0
Os09g0248200 Frigida-like family protein 997 0.0
Os07g0592300 Frigida-like family protein 310 2e-84
Os07g0173200 Frigida-like family protein 149 7e-36
Os03g0794900 Frigida-like family protein 145 1e-34
Os01g0181000 Frigida-like family protein 111 1e-24
Os03g0588200 Frigida-like family protein 96 7e-20
Os03g0588600 Frigida-like family protein 66 5e-11
>Os09g0248300 Frigida-like family protein
Length = 542
Score = 1090 bits (2820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/526 (100%), Positives = 526/526 (100%)
Query: 1 MSDMESMTALMESTGSKLQLLQRAFAELESQSAVSLNLKWKQLEDHFHGLEQSLKKKFDE 60
MSDMESMTALMESTGSKLQLLQRAFAELESQSAVSLNLKWKQLEDHFHGLEQSLKKKFDE
Sbjct: 1 MSDMESMTALMESTGSKLQLLQRAFAELESQSAVSLNLKWKQLEDHFHGLEQSLKKKFDE 60
Query: 61 LKEQEKEFKETVTKSEQMLEQQEAAVVAKELTSLERLQQKRDAALAMIFGKSKLNLSMPV 120
LKEQEKEFKETVTKSEQMLEQQEAAVVAKELTSLERLQQKRDAALAMIFGKSKLNLSMPV
Sbjct: 61 LKEQEKEFKETVTKSEQMLEQQEAAVVAKELTSLERLQQKRDAALAMIFGKSKLNLSMPV 120
Query: 121 INPISKSVSNNAVLNGNIASLWPKPATAHGAYLQDGNTAVKPRSQLVILCEEMNVNGLHK 180
INPISKSVSNNAVLNGNIASLWPKPATAHGAYLQDGNTAVKPRSQLVILCEEMNVNGLHK
Sbjct: 121 INPISKSVSNNAVLNGNIASLWPKPATAHGAYLQDGNTAVKPRSQLVILCEEMNVNGLHK 180
Query: 181 FISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGVRRTC 240
FISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGVRRTC
Sbjct: 181 FISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGVRRTC 240
Query: 241 LMLMESLAQLQTDATTGFISKGQMLTASIKERAKKIALEWKSKLDSLDFDASNGNCLEAH 300
LMLMESLAQLQTDATTGFISKGQMLTASIKERAKKIALEWKSKLDSLDFDASNGNCLEAH
Sbjct: 241 LMLMESLAQLQTDATTGFISKGQMLTASIKERAKKIALEWKSKLDSLDFDASNGNCLEAH 300
Query: 301 AFLQLLATFAIFSEFAEDELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVLIENGRTI 360
AFLQLLATFAIFSEFAEDELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVLIENGRTI
Sbjct: 301 AFLQLLATFAIFSEFAEDELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVLIENGRTI 360
Query: 361 DAINLAYAFELTDQFEPVELLKAYLKEVKSMSHVKTGKMSPGVQNEINERELSALKAVIK 420
DAINLAYAFELTDQFEPVELLKAYLKEVKSMSHVKTGKMSPGVQNEINERELSALKAVIK
Sbjct: 361 DAINLAYAFELTDQFEPVELLKAYLKEVKSMSHVKTGKMSPGVQNEINERELSALKAVIK 420
Query: 421 CIEEHKLDEKYPIDPLQRRVIQLEKAKADKRRAVEAGKPQSKRPRANGSVYAPHITSFSD 480
CIEEHKLDEKYPIDPLQRRVIQLEKAKADKRRAVEAGKPQSKRPRANGSVYAPHITSFSD
Sbjct: 421 CIEEHKLDEKYPIDPLQRRVIQLEKAKADKRRAVEAGKPQSKRPRANGSVYAPHITSFSD 480
Query: 481 KSFYQAAAPQRHSYPYERQYVYGAEAHHHPTMISSAPYGMSPAHTT 526
KSFYQAAAPQRHSYPYERQYVYGAEAHHHPTMISSAPYGMSPAHTT
Sbjct: 481 KSFYQAAAPQRHSYPYERQYVYGAEAHHHPTMISSAPYGMSPAHTT 526
>Os09g0248200 Frigida-like family protein
Length = 540
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/530 (91%), Positives = 505/530 (95%), Gaps = 5/530 (0%)
Query: 1 MSDMESMTALMESTGSKLQLLQRAFAELESQSAVSLNLKWKQLEDHFHGLEQSLKKKFDE 60
MSDMESM LMESTGSKLQ LQRAFAELESQSAVSLNLKWKQLEDHFHGLEQSLKKKFD+
Sbjct: 1 MSDMESMATLMESTGSKLQQLQRAFAELESQSAVSLNLKWKQLEDHFHGLEQSLKKKFDD 60
Query: 61 LKEQEKEFKETVTKSEQMLEQQEAAVVAKELTSLERLQQKRDAALAMIFGKSKLNLSMPV 120
LK QE+EF+ETV KSEQMLEQQEA VVAKELTSLE+LQQKRDAALA+IFGKSKLNLS P+
Sbjct: 61 LKRQEEEFEETVAKSEQMLEQQEAVVVAKELTSLEKLQQKRDAALAVIFGKSKLNLSTPL 120
Query: 121 INPISKSVSNNAVLNGNIA-SL---WPKPATAHGAYLQDGNTAVKPRSQLVILCEEMNVN 176
INPISKSV+NNAV NGNI SL WPKPATAHGAYLQD NTAVKPRSQLV+LCEEMNVN
Sbjct: 121 INPISKSVNNNAVFNGNIGGSLSVKWPKPATAHGAYLQDENTAVKPRSQLVVLCEEMNVN 180
Query: 177 GLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGV 236
GLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGV
Sbjct: 181 GLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGV 240
Query: 237 RRTCLMLMESLAQLQTDATTGFISKGQMLTASIKERAKKIALEWKSKLDSLDFDASNGNC 296
RRTCLMLMESLAQLQTDATTGFIS+GQ+LTASIKERAKKIALEWKSKLDSLDFDASNGNC
Sbjct: 241 RRTCLMLMESLAQLQTDATTGFISEGQVLTASIKERAKKIALEWKSKLDSLDFDASNGNC 300
Query: 297 LEAHAFLQLLATFAIFSEFAEDELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVLIEN 356
LEAHAFLQLLATF IF+EFA+DELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVL+EN
Sbjct: 301 LEAHAFLQLLATFGIFAEFAQDELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVLVEN 360
Query: 357 GRTIDAINLAYAFELTDQFEPVELLKAYLKEVKSMSHVKTGKMSPGVQNEINERELSALK 416
GRTIDAINLAYAFELT+QFEPVELLKAYL+EVKS+ H KTGK+S VQNE+NERELSALK
Sbjct: 361 GRTIDAINLAYAFELTNQFEPVELLKAYLQEVKSVPHFKTGKISLQVQNEMNERELSALK 420
Query: 417 AVIKCIEEHKLDEKYPIDPLQRRVIQLEKAKADKRRAVEAGKPQSKRPRANGSVYAPHIT 476
A IKCIEEHKLDEKYPID LQ+RVIQLEKAKADKRRAVEA KPQSKRPRANGSVYAPH T
Sbjct: 421 AAIKCIEEHKLDEKYPIDLLQKRVIQLEKAKADKRRAVEAAKPQSKRPRANGSVYAPH-T 479
Query: 477 SFSDKSFYQAAAPQRHSYPYERQYVYGAEAHHHPTMISSAPYGMSPAHTT 526
SF DKSFYQAA PQRHSYPYERQYVYGAEAHHHPTMISSAPYG+SPAHTT
Sbjct: 480 SFPDKSFYQAAPPQRHSYPYERQYVYGAEAHHHPTMISSAPYGISPAHTT 529
>Os07g0592300 Frigida-like family protein
Length = 608
Score = 310 bits (793), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 199/482 (41%), Positives = 286/482 (59%), Gaps = 19/482 (3%)
Query: 3 DMESMTALMESTGSKLQLLQRAFAELESQSAVSLNLK----WKQLEDHFHGLEQSLKKKF 58
D ++ EST L+ L F +L+S + SL L+ W+ ++ HF LE+S K K
Sbjct: 5 DTSHISGSSESTIPLLEQLAEVFGKLKSHTETSLQLQNGINWEDIKAHFLNLEKSYKSKC 64
Query: 59 DELKEQEKEFKETVTKSEQMLEQQEAAVVAKELTSLERLQQKRD---AALAMIFGKSKLN 115
DEL E++K +E +S +++ ++EA V AKE L + Q+ RD +AL+ + K K+
Sbjct: 65 DELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALSEVRQKYKVE 124
Query: 116 LSMPVINPISKS----VSNNAVLNGNIASLWPKPATAHGAYLQDGNTAVKPRSQLVILCE 171
L+ + SK S N +N AS A+ G + VKPR L LCE
Sbjct: 125 LAGILDANGSKDKKVRTSTND-MNALCASEENTTASGLGEPSEASPVDVKPRPVLKQLCE 183
Query: 172 EMNVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDG 231
+M+ GL KF+S+N K L+S+R+E+ ALR ATDP VL SLE F+ D+ G K
Sbjct: 184 QMDTAGLLKFLSENWKKLSSLRDELSAALRCATDPARFVLGSLEGFFPSDHTSSPGNKQI 243
Query: 232 NLLGVRRTCLMLMESLAQLQTDATTGFISKGQMLTASIKERAKKIALEWKSKLDSLDFDA 291
L G RR+C++LME++ G ++ I+E AK IA EWKSKL +D DA
Sbjct: 244 ILQGQRRSCIILMEAITPALATKEPG---DNHPWSSEIRELAKAIAEEWKSKLAEVDLDA 300
Query: 292 SNGNCLEAHAFLQLLATFAIFSEFAEDELCKLLPSVSRRRQTPELCRILGLSQNMPGVIG 351
S+G LEA AFLQLL TF + S EDELCKL+ +VSRR+QT ELCR L L++ +P +I
Sbjct: 301 SDGYSLEAQAFLQLLTTFNVDSVLDEDELCKLVVAVSRRKQTAELCRSLCLNERIPDIIK 360
Query: 352 VLIENGRTIDAINLAYAFELTDQFEPVELLKAYLKEVK-SMSHVKTGKMSPGVQNEINER 410
L+ R IDA+ +AF L++ F P LLK Y++E+K S+ + G + ++++ R
Sbjct: 361 ELVNRHRQIDAVQFIHAFGLSESFPPAPLLKTYVEELKDSLGNNGDGNAA-SLKDDPKTR 419
Query: 411 ELSALKAVIKCIEEHKLDEKYPIDPLQRRVIQLEKAKADKRRAVEAGKPQSKRPRANGSV 470
EL AL+AVIKCIEE+KL + YP+ PLQ+RV +L K+K +K R +EAG+ +K+PR G+
Sbjct: 420 ELLALRAVIKCIEEYKLQKDYPLGPLQKRVAEL-KSKGEK-RPLEAGRHNAKKPRTFGNS 477
Query: 471 YA 472
A
Sbjct: 478 AA 479
>Os07g0173200 Frigida-like family protein
Length = 453
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 119/438 (27%), Positives = 203/438 (46%), Gaps = 56/438 (12%)
Query: 11 MESTGSKLQLLQRAFAELESQSAV--SLNLKWKQLEDHFHGLEQSLKKKFDELKEQEKEF 68
M S ++ + FAELE Q + S +KQLE+HF LE+ L + D L+ + +
Sbjct: 1 MASPAAEGDAVSAGFAELERQQQLLASCTRLYKQLEEHFASLERGLAARSDSLRHKRRAA 60
Query: 69 KETVTKSEQMLEQQEAAVVAKELTSLERLQQKRDAALAMIFGKSKLNLSMPVINPISKSV 128
+ + + L ++EA++ +L+ L A+ S+P
Sbjct: 61 EARASAAMDSLRRREASIDGSVSRALDHLDDLASAS------------SVP--------- 99
Query: 129 SNNAVLNGNIASLWPKPATAHGAYLQDGNTAVKPRSQLVILCEEMNVNGLHKFISDNRKD 188
S+ A +A L +C M+ G F+ RK+
Sbjct: 100 SDAAAAAEGVAE------------------------SLRAMCARMDSAGFFGFVVARRKE 135
Query: 189 LTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGVRRTCLMLMESLA 248
+ ++R E+P AL+ DP V+ ++ D + +D ++ N + C++++E+
Sbjct: 136 VDALRAEMPPALKCCVDPAKFVMDAVADVF-----PVDRREAKNPTDLAWACVLILEAAV 190
Query: 249 QLQTDATTGFISKGQMLTASIKERAKKIALEWKSKLDSLDFDASNGNCLEAHAFLQLLAT 308
D + ++ + +ERA+ +A EWK + +AHAFLQ +AT
Sbjct: 191 PALADPDPEIGAARLLVPRAARERARGMAREWKEAAER-KGGVEWTKPPDAHAFLQHVAT 249
Query: 309 FAIFSEFAEDELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVLIENGRTIDAINLAYA 368
FA+ +++ S S RRQ P L LGL ++M +I LI G+ +DA+N AY
Sbjct: 250 FAVAEREDRGIYRRIVVSFSWRRQMPRLALTLGLEEDMADIIEELIAKGQQLDAVNFAYE 309
Query: 369 FELTDQFEPVELLKAYLKEVKSMSHVKTGK---MSPGVQNEINERELSALKAVIKCIEEH 425
L ++F PV LLK+YL + K S + S + N++E S L+AVIKCIE+
Sbjct: 310 AGLQEKFPPVPLLKSYLADSKKTSCTVSDNSSTSSGQSGSNANKKEQSVLRAVIKCIEDR 369
Query: 426 KLDEKYPIDPLQRRVIQL 443
KL+ ++P++ LQR++ +L
Sbjct: 370 KLEAEFPLEDLQRQLEEL 387
>Os03g0794900 Frigida-like family protein
Length = 550
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/424 (26%), Positives = 203/424 (47%), Gaps = 54/424 (12%)
Query: 21 LQRAFAELESQSAV--SLNLKWKQLEDHFHGLEQSLKKKFDELKEQEKEFKETVTKSEQM 78
++ FAELE Q + + ++QL +HF LE+ L + + L+ + + F + T
Sbjct: 23 VRDGFAELERQQQLLATCTRLYQQLTEHFGSLERRLAARSETLRTKRR-FLDVRTSRRLE 81
Query: 79 LEQQEAAVVAKELTSLERLQQKRDAALAMIFGKSKLNLSMPVINPISKSVSNNAVLNGNI 138
++ A + ++L++ ++ ++K +A G+
Sbjct: 82 ALRRREASI-----------------------DGSVSLALSRLDSLAK---GDAGTTGS- 114
Query: 139 ASLWPKPATAHGAYLQDGNTAVKPRSQLVILCEEMNVNGLHKFISDNRKDLTSIREEIPV 198
A+A A + +G L LC M+ G F+ RK++ ++R E+P
Sbjct: 115 -------ASADAAGIAEG---------LRSLCASMDSAGFFTFVVARRKEVDALRAELPD 158
Query: 199 ALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGVRRTCLMLMESLAQLQTDATTGF 258
AL+ DP + ++ + + D + D + C++++E++ D
Sbjct: 159 ALKRCVDPARFAMDAVSEVFPIDKRAVRSPTD-----LAWACVLILEAVVPSLADPDPEI 213
Query: 259 ISKGQMLTASIKERAKKIALEWKSKLDSLDFDASNGNCLEAHAFLQLLATFAIFSEFAED 318
+ M+ + +ERA+ +A EWK + +AHAFLQ +ATFA+ + ++
Sbjct: 214 GAARPMVPQAARERARGMAREWKDAAEKKG-GVEGAKPPDAHAFLQHVATFAVAEKEDKE 272
Query: 319 ELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVLIENGRTIDAINLAYAFELTDQFEPV 378
+++ S S RRQ P L LGL M +I LI G+ +DA+N AY L ++F P
Sbjct: 273 LYRRIVVSFSWRRQMPRLAITLGLEDEMDDIIEELITKGQQLDAVNFAYEAGLQEKFPPA 332
Query: 379 ELLKAYLKEVKSM-SHVKTGKMSPGVQ-NEINERELSALKAVIKCIEEHKLDEKYPIDPL 436
LLKAYL++ K + S+ S G + N++E SAL+AVIKC+E+HKL+ ++P++ L
Sbjct: 333 PLLKAYLEDSKKIPSNSDNLSTSTGQSGSNANKKEQSALRAVIKCVEDHKLEAEFPLEDL 392
Query: 437 QRRV 440
+ R+
Sbjct: 393 RERL 396
>Os01g0181000 Frigida-like family protein
Length = 606
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 14/234 (5%)
Query: 290 DASNGNCLEAHAFLQLLATFAIFSEFAEDELCKLLPSVSRRRQTPELCRILGLSQNMPGV 349
+ G E FLQ++A F + + D L +LL RRR+ + +LG ++ V
Sbjct: 326 EGEKGGQAEVQIFLQMVAAFGLKDRYDVDFLRRLLVDNGRRRELARIACVLGFEDSLRDV 385
Query: 350 IGVLIENGRTIDAINLAYAFELTDQFEPVELLKAYLKEVKSMSHV--KTGKMSPGVQNEI 407
I I++G I+AI++A+ L ++F PV LLK+Y+K + + + V + G+ S V E
Sbjct: 386 IEEFIKSGNEIEAIHIAHEAGLLERFPPVPLLKSYIKRITNKTQVALRGGRHSNSVVEEA 445
Query: 408 NERELSALKAVIKCIEEHKLDEKYPIDPLQRRVIQLEKAKADKRRAVEAGKPQSKRPRAN 467
N E +A K++I+C+E +L + +D ++++V ++EK KAD+R+ + Q+ + RA
Sbjct: 446 NNSECNAYKSIIRCVETCQLTSAFNLDGIRKKVARMEKEKADRRKPSGMNRFQNNK-RAR 504
Query: 468 GS----VYAPHITSFSDKSFYQAA--APQRHSYPYERQYVY-----GAEAHHHP 510
G+ + P S S Y ++ P HS+PY + + GA H P
Sbjct: 505 GASGPQSFPPSKYSRGSNSNYGSSFRNPASHSFPYTDRAGFVGPAPGARPHFAP 558
>Os03g0588200 Frigida-like family protein
Length = 798
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 26/243 (10%)
Query: 151 AYLQDGNTAVKPRS-QLVILCEEMNVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGL 209
A + GN A+ S L +C M+V GL K + N+ + E PV +R A D L
Sbjct: 286 ASREQGNRALPSCSDHLRGVCAGMDVRGLLKLVCKNQS--ICLWHEYPVVMRHAPDAAAL 343
Query: 210 VLASLEDFYFGDNLILDGKKDGNLLGVRRTCLMLMESLAQLQTDATTGFISKGQMLTASI 269
VL ++ F + K GN +G+ R CL + + L++
Sbjct: 344 VLQVVQGFLLSKKMKTT-KVWGNCVGLIR-CLPAVNA-----------------SLSSDT 384
Query: 270 KERAKKIALEWKSKLDSLDFDASNGNCLEAHAFLQLLATFAIFSEFAEDELCKLLPSVSR 329
++AK++A +WK +DS N L + L L ++ I SEF+ DE+ + ++SR
Sbjct: 385 MKQAKQLAKDWKEMIDSTGSSRDVLN-LSSWGLLYFLISYNIVSEFSVDEIFCIFGTLSR 443
Query: 330 RRQTP---ELCRILGLSQNMPGVIGVLIENGRTIDAINLAYAFELTDQFEPVELLKAYLK 386
++Q ELC+ LGL + +I LI NG+ ++A+ L AF L D++ P+ LLK Y++
Sbjct: 444 KQQKKNCIELCKGLGLVNRITDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVE 503
Query: 387 EVK 389
K
Sbjct: 504 RAK 506
>Os03g0588600 Frigida-like family protein
Length = 670
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 104/220 (47%), Gaps = 15/220 (6%)
Query: 239 TCLMLMESLAQLQTDATTGFISKGQMLTASIKERAKKIALEWKSKLDSLDFDASNGNCLE 298
+C+ L+ + +L + G + E+A ++A +WK + + + N L
Sbjct: 331 SCVELLSCVPKLAVAPSPGTM-----------EQANRLAEDWKEMIGRTESCSMNLGRLA 379
Query: 299 AHAFLQLLATFAIFSEFAEDELCKLLPSV--SRRRQTPELCRILGLSQNMPGVIGVLIEN 356
L L ++ I EF +E+ ++ +++ LC+ LGL M +G LIE+
Sbjct: 380 VWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDDKKQCCISLCKYLGLIDKMADSVGHLIEH 439
Query: 357 GRTIDAINLAYAFELTDQFEPVELLKAYLKEVKSMSHVKTGKMSPGVQNEIN-ERELSAL 415
G+ + AI LA LTD++ P+ +++ Y++ K + S +++ ++++AL
Sbjct: 440 GQQLVAIRLACTLNLTDKYTPLSIMEDYIQNAKETAQEILSMESDSESLKLSMSKQVNAL 499
Query: 416 KAVIKCIEEHKLDEKYPIDPLQRRVIQLEKAKADKRRAVE 455
+ + E +D + D ++ + QL A+KR ++E
Sbjct: 500 ILSWRVVGECNIDSVH-CDRIKAEITQLLHKYANKRHSLE 538
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,313,810
Number of extensions: 653533
Number of successful extensions: 2435
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 2418
Number of HSP's successfully gapped: 9
Length of query: 542
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 436
Effective length of database: 11,501,117
Effective search space: 5014487012
Effective search space used: 5014487012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)