Os03g0794900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Frigida-like family protein.
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Os03g0794900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Frigida-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.88 | 0.297 | 14.2 | 1.45 | 1.03 | 0.943 | 0.615 | -0.853 | 0.532 | 0.897 | 78.2 | 1358 | -- | -- |
| 40.5 | 0.296 | 14.2 | 1.39 | 1.03 | 0.914 | 0.637 | -- | 0.524 | 0.886 | 78.41 | 1358 | -- | -- |
| 41.45 | 0.3 | 14.2 | 1.43 | 1.03 | 0.924 | -- | -0.923 | 0.533 | 0.926 | 78 | 1351 | -- | -- |
| 42.21 | 0.303 | 14.2 | 1.36 | 1.04 | 0.871 | -- | -- | 0.514 | 0.933 | 78 | 1358 | -- | -- |
| 70.53 | 0.393 | 14.2 | 1.4 | -- | 0.614 | -- | 0.17 | 0.465 | -- | 78 | 1351 | -- | -- |
| 50.29 | 0.332 | 14.3 | 1.33 | 0.991 | -- | 0.552 | -- | 0.474 | 0.751 | -- | -- | -- | -- |
| 51.58 | 0.336 | 14.3 | 1.31 | 0.99 | -- | -- | -- | 0.471 | 0.786 | -- | -- | -- | -- |
| 70.72 | 0.393 | 14.2 | 1.4 | -- | 0.615 | -- | -- | 0.466 | -- | 78 | 1351 | -- | -- |
| 84.07 | 0.427 | 14.3 | -- | 1.15 | 0.824 | -- | -- | 0.437 | 0.635 | 85 | 2378 | -- | -- |
| 112.82 | 0.496 | 14.2 | 1.35 | -- | -- | -- | -- | 0.489 | -- | -- | -- | -- | -- |
| 97.02 | 0.461 | 14.3 | -- | 1.01 | -- | -- | -- | 0.324 | 0.845 | -- | -- | -- | -- |
| 115.53 | 0.502 | 14.3 | -- | -- | 0.632 | -- | -- | 0.332 | -- | 82.11 | 4534 | -- | -- |
| 160.83 | 0.592 | 14.3 | -- | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 2 | 39.04 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 3 | 39.14 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 4 | 39.15 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 6 | 39.20 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 8 | 39.31 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 9 | 39.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 24 | 39.58 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 27 | 39.67 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 31 | 39.69 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 161 | 40.25 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 176 | 40.28 | humidity | 70 | 1440 | > th | dose dependent | sin | 21 | NA |
| 241 | 40.41 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 334 | 40.60 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 335 | 40.60 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 338 | 40.60 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 345 | 40.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 346 | 40.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 358 | 40.66 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 399 | 40.76 | humidity | 70 | 1440 | > th | dose dependent | rect. | 2 | 19 |
| 442 | 40.84 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 458 | 40.87 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 582 | 41.08 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 612 | 41.12 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 615 | 41.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 10 |
| 617 | 41.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 623 | 41.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 636 | 41.15 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 644 | 41.15 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 647 | 41.15 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 672 | 41.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 805 | 41.32 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 840 | 41.35 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 19 |
| 945 | 41.45 | humidity | 90 | 1440 | < th | dose dependent | sin | 18 | NA |
| 949 | 41.45 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 956 | 41.46 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 959 | 41.47 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 990 | 41.48 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 991 | 41.48 | humidity | 70 | 1440 | > th | dose dependent | rect. | 17 | 4 |