BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0794900 Os03g0794900|AK102390
(550 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0794900 Frigida-like family protein 892 0.0
Os07g0173200 Frigida-like family protein 461 e-130
Os07g0592300 Frigida-like family protein 131 1e-30
Os09g0248300 Frigida-like family protein 111 1e-24
Os09g0248200 Frigida-like family protein 108 7e-24
Os01g0181000 Frigida-like family protein 87 4e-17
>Os03g0794900 Frigida-like family protein
Length = 550
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/550 (82%), Positives = 451/550 (82%)
Query: 1 MAAPAAESAVVGVGVDSATSAAVRDGFAELERQQQLLATCTRLYQQLTEHFGSLERRLAA 60
MAAPAAESAVVGVGVDSATSAAVRDGFAELERQQQLLATCTRLYQQLTEHFGSLERRLAA
Sbjct: 1 MAAPAAESAVVGVGVDSATSAAVRDGFAELERQQQLLATCTRLYQQLTEHFGSLERRLAA 60
Query: 61 RSETLRTKRRFLDVRTXXXXXXXXXXXXXIDGSVSLALSRLDSLAKXXXXXXXXXXXXXX 120
RSETLRTKRRFLDVRT IDGSVSLALSRLDSLAK
Sbjct: 61 RSETLRTKRRFLDVRTSRRLEALRRREASIDGSVSLALSRLDSLAKGDAGTTGSASADAA 120
Query: 121 XIAEGLRSLCASMDSAGFFTFVVARRKEVDALRAELPDALKRCVDPARFAMDAVSEVFPI 180
IAEGLRSLCASMDSAGFFTFVVARRKEVDALRAELPDALKRCVDPARFAMDAVSEVFPI
Sbjct: 121 GIAEGLRSLCASMDSAGFFTFVVARRKEVDALRAELPDALKRCVDPARFAMDAVSEVFPI 180
Query: 181 DKRAVRSPTDLAWACVLILEAVVPSLADPDPEIGAARPMVPQXXXXXXXXXXXXWKDAAE 240
DKRAVRSPTDLAWACVLILEAVVPSLADPDPEIGAARPMVPQ WKDAAE
Sbjct: 181 DKRAVRSPTDLAWACVLILEAVVPSLADPDPEIGAARPMVPQAARERARGMAREWKDAAE 240
Query: 241 KKGGVEGAKPPDAHAFLQHVATFAVAEKEDKELYRRIVVSFSWRRQMPRLAITXXXXXXX 300
KKGGVEGAKPPDAHAFLQHVATFAVAEKEDKELYRRIVVSFSWRRQMPRLAIT
Sbjct: 241 KKGGVEGAKPPDAHAFLQHVATFAVAEKEDKELYRRIVVSFSWRRQMPRLAITLGLEDEM 300
Query: 301 XXXXXXXXTKGQQLDAVNFAYEAGLQEKFPPAPLLKAYLEDSKKIPSNSDNLSTSTGQSG 360
TKGQQLDAVNFAYEAGLQEKFPPAPLLKAYLEDSKKIPSNSDNLSTSTGQSG
Sbjct: 301 DDIIEELITKGQQLDAVNFAYEAGLQEKFPPAPLLKAYLEDSKKIPSNSDNLSTSTGQSG 360
Query: 361 SNANKKEQSALRAVIKCVEDHKLEAEFPLEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
SNANKKEQSALRAVIKCVEDHKLEAEFPLED
Sbjct: 361 SNANKKEQSALRAVIKCVEDHKLEAEFPLEDLRERLEELEKAKTEKKKAASSSSSGGSSG 420
Query: 421 PANKRIRASTGGPMPPAKAGRLTDYXXXXXXXXXXXXXXXFIRSPSHASYGTASPYSYDR 480
PANKRIRASTGGPMPPAKAGRLTDY FIRSPSHASYGTASPYSYDR
Sbjct: 421 PANKRIRASTGGPMPPAKAGRLTDYTGTPSSPATTTTNATFIRSPSHASYGTASPYSYDR 480
Query: 481 PAAHPLYCGQNTLAMREPYAYHHPSEVSSVGLGMSYPSPPITYPAYAGYSNGIGYSNAMA 540
PAAHPLYCGQNTLAMREPYAYHHPSEVSSVGLGMSYPSPPITYPAYAGYSNGIGYSNAMA
Sbjct: 481 PAAHPLYCGQNTLAMREPYAYHHPSEVSSVGLGMSYPSPPITYPAYAGYSNGIGYSNAMA 540
Query: 541 PAFHHQAYYR 550
PAFHHQAYYR
Sbjct: 541 PAFHHQAYYR 550
>Os07g0173200 Frigida-like family protein
Length = 453
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 254/392 (64%), Positives = 283/392 (72%), Gaps = 14/392 (3%)
Query: 1 MAAPAAESAVVGVGVDSATSAAVRDGFAELERQQQLLATCTRLYQQLTEHFGSLERRLAA 60
MA+PAAE V G FAELERQQQLLA+CTRLY+QL EHF SLER LAA
Sbjct: 1 MASPAAEGDAVSAG------------FAELERQQQLLASCTRLYKQLEEHFASLERGLAA 48
Query: 61 RSETLRTKRRFLDVRTXXXXXXXXXXXXXIDGSVSLALSRLDSLAKXXXXXXXXXXXXXX 120
RS++LR KRR + R IDGSVS AL LD LA
Sbjct: 49 RSDSLRHKRRAAEARASAAMDSLRRREASIDGSVSRALDHLDDLA-SASSVPSDAAAAAE 107
Query: 121 XIAEGLRSLCASMDSAGFFTFVVARRKEVDALRAELPDALKRCVDPARFAMDAVSEVFPI 180
+AE LR++CA MDSAGFF FVVARRKEVDALRAE+P ALK CVDPA+F MDAV++VFP+
Sbjct: 108 GVAESLRAMCARMDSAGFFGFVVARRKEVDALRAEMPPALKCCVDPAKFVMDAVADVFPV 167
Query: 181 DKRAVRSPTDLAWACVLILEAVVPSLADPDPEIGAARPMVPQXXXXXXXXXXXXWKDAAE 240
D+R ++PTDLAWACVLILEA VP+LADPDPEIGAAR +VP+ WK+AAE
Sbjct: 168 DRREAKNPTDLAWACVLILEAAVPALADPDPEIGAARLLVPRAARERARGMAREWKEAAE 227
Query: 241 KKGGVEGAKPPDAHAFLQHVATFAVAEKEDKELYRRIVVSFSWRRQMPRLAITXXXXXXX 300
+KGGVE KPPDAHAFLQHVATFAVAE+ED+ +YRRIVVSFSWRRQMPRLA+T
Sbjct: 228 RKGGVEWTKPPDAHAFLQHVATFAVAEREDRGIYRRIVVSFSWRRQMPRLALTLGLEEDM 287
Query: 301 XXXXXXXXTKGQQLDAVNFAYEAGLQEKFPPAPLLKAYLEDSKKIPSN-SDNLSTSTGQS 359
KGQQLDAVNFAYEAGLQEKFPP PLLK+YL DSKK SDN STS+GQS
Sbjct: 288 ADIIEELIAKGQQLDAVNFAYEAGLQEKFPPVPLLKSYLADSKKTSCTVSDNSSTSSGQS 347
Query: 360 GSNANKKEQSALRAVIKCVEDHKLEAEFPLED 391
GSNANKKEQS LRAVIKC+ED KLEAEFPLED
Sbjct: 348 GSNANKKEQSVLRAVIKCIEDRKLEAEFPLED 379
>Os07g0592300 Frigida-like family protein
Length = 608
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 132/270 (48%), Gaps = 11/270 (4%)
Query: 126 LRSLCASMDSAGFFTFVVARRKEVDALRAELPDALKRCVDPARFAMDAVSEVFPIDKRAV 185
L+ LC MD+AG F+ K++ +LR EL AL+ DPARF + ++ FP D +
Sbjct: 178 LKQLCEQMDTAGLLKFLSENWKKLSSLRDELSAALRCATDPARFVLGSLEGFFPSDHTSS 237
Query: 186 RSPTDLAW-----ACVLILEAVVPSLADPDPEIGAARPMVPQXXXXXXXXXXXXWKDAAE 240
+ +C++++EA+ P+LA +P G P + AE
Sbjct: 238 PGNKQIILQGQRRSCIILMEAITPALATKEP--GDNHPWSSEIRELAKAIAEEWKSKLAE 295
Query: 241 KKGGVEGAKPPDAHAFLQHVATFAVAEKEDKELYRRIVVSFSWRRQMPRLAITXXXXXXX 300
+A AFLQ + TF V D++ ++VV+ S R+Q L +
Sbjct: 296 VDLDASDGYSLEAQAFLQLLTTFNVDSVLDEDELCKLVVAVSRRKQTAELCRSLCLNERI 355
Query: 301 XXXXXXXXTKGQQLDAVNFAYEAGLQEKFPPAPLLKAYLEDSK-KIPSNSDNLSTSTGQS 359
+ +Q+DAV F + GL E FPPAPLLK Y+E+ K + +N D + S
Sbjct: 356 PDIIKELVNRHRQIDAVQFIHAFGLSESFPPAPLLKTYVEELKDSLGNNGDGNAASL--- 412
Query: 360 GSNANKKEQSALRAVIKCVEDHKLEAEFPL 389
+ +E ALRAVIKC+E++KL+ ++PL
Sbjct: 413 KDDPKTRELLALRAVIKCIEEYKLQKDYPL 442
>Os09g0248300 Frigida-like family protein
Length = 542
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 126/268 (47%), Gaps = 8/268 (2%)
Query: 129 LCASMDSAGFFTFVVARRKEVDALRAELPDALKRCVDPARFAMDAVSEVFPIDKRAVRSP 188
LC M+ G F+ RK++ ++R E+P AL+ DP + ++ + + D +
Sbjct: 169 LCEEMNVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGK 228
Query: 189 TD-----LAWACVLILEAVVPSLADPDPEIGAARPMVPQXXXXXXXXXXXXWKDAAEKKG 243
D + C++++E++ D + M+ WK +
Sbjct: 229 KDGNLLGVRRTCLMLMESLAQLQTDATTGFISKGQMLTASIKERAKKIALEWKSKLDSLD 288
Query: 244 -GVEGAKPPDAHAFLQHVATFAVAEKEDKELYRRIVVSFSWRRQMPRLAITXXXXXXXXX 302
+AHAFLQ +ATFA+ + ++ +++ S S RRQ P L
Sbjct: 289 FDASNGNCLEAHAFLQLLATFAIFSEFAEDELCKLLPSVSRRRQTPELCRILGLSQNMPG 348
Query: 303 XXXXXXTKGQQLDAVNFAYEAGLQEKFPPAPLLKAYLEDSKKIPSNSDNLSTSTGQSGSN 362
G+ +DA+N AY L ++F P LLKAYL++ K + S+ S G +
Sbjct: 349 VIGVLIENGRTIDAINLAYAFELTDQFEPVELLKAYLKEVKSM-SHVKTGKMSPGVQ-NE 406
Query: 363 ANKKEQSALRAVIKCVEDHKLEAEFPLE 390
N++E SAL+AVIKC+E+HKL+ ++P++
Sbjct: 407 INERELSALKAVIKCIEEHKLDEKYPID 434
>Os09g0248200 Frigida-like family protein
Length = 540
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 12/273 (4%)
Query: 126 LRSLCASMDSAGFFTFVVARRKEVDALRAELPDALKRCVDPARFAMDAVSEVFPIDKRAV 185
L LC M+ G F+ RK++ ++R E+P AL+ DP + ++ + + D +
Sbjct: 170 LVVLCEEMNVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLIL 229
Query: 186 RSPTD-----LAWACVLILEAVVPSLADPDPEIGAARPMVPQXXXXXXXXXXXXWKDAAE 240
D + C++++E++ D + ++ WK +
Sbjct: 230 DGKKDGNLLGVRRTCLMLMESLAQLQTDATTGFISEGQVLTASIKERAKKIALEWKSKLD 289
Query: 241 KKG-GVEGAKPPDAHAFLQHVATFAV-AEKEDKELYRRIVVSFSWRRQMPRLAITXXXXX 298
+AHAFLQ +ATF + AE EL + ++ S S RRQ P L
Sbjct: 290 SLDFDASNGNCLEAHAFLQLLATFGIFAEFAQDELCK-LLPSVSRRRQTPELCRILGLSQ 348
Query: 299 XXXXXXXXXXTKGQQLDAVNFAYEAGLQEKFPPAPLLKAYLEDSKKIPS-NSDNLSTSTG 357
G+ +DA+N AY L +F P LLKAYL++ K +P + +S
Sbjct: 349 NMPGVIGVLVENGRTIDAINLAYAFELTNQFEPVELLKAYLQEVKSVPHFKTGKISL--- 405
Query: 358 QSGSNANKKEQSALRAVIKCVEDHKLEAEFPLE 390
Q + N++E SAL+A IKC+E+HKL+ ++P++
Sbjct: 406 QVQNEMNERELSALKAAIKCIEEHKLDEKYPID 438
>Os01g0181000 Frigida-like family protein
Length = 606
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 129/299 (43%), Gaps = 46/299 (15%)
Query: 240 EKKGGVEGAKPPDAHAFLQHVATFAVAEKEDKELYRRIVVSFSWRRQMPRLAITXXXXXX 299
E K G +G + + FLQ VA F + ++ D + RR++V RR++ R+A
Sbjct: 323 EVKEGEKGGQA-EVQIFLQMVAAFGLKDRYDVDFLRRLLVDNGRRRELARIACVLGFEDS 381
Query: 300 XXXXXXXXXTKGQQLDAVNFAYEAGLQEKFPPAPLLKAYLEDSKKIPSNSDNLSTSTGQS 359
G +++A++ A+EAGL E+FPP PLLK+Y+ K+I +N ++ G+
Sbjct: 382 LRDVIEEFIKSGNEIEAIHIAHEAGLLERFPPVPLLKSYI---KRI-TNKTQVALRGGRH 437
Query: 360 GSN----ANKKEQSALRAVIKCVEDHKLEAEFPLEDXXXXXXXXXXXXXXXXXXXXXXXX 415
++ AN E +A +++I+CVE +L + F L+
Sbjct: 438 SNSVVEEANNSECNAYKSIIRCVETCQLTSAFNLDGIRKKVARMEKEKADRRKPSGMNRF 497
Query: 416 XXXXXPANKRIRASTG-GPMPPAKAGRLTDYXXXXXXXXXXXXXXXFIRSPSHASYGTAS 474
NKR R ++G PP+K R S+++YG+
Sbjct: 498 QN-----NKRARGASGPQSFPPSKYSR-----------------------GSNSNYGS-- 527
Query: 475 PYSYDRPAAHPL-YCGQNTLAMREPYAYHHPSEVSSVGL---GMSYPSPPITYPAYAGY 529
S+ PA+H Y + P A H + SS+G G+ Y P T+ A GY
Sbjct: 528 --SFRNPASHSFPYTDRAGFVGPAPGARPHFAPGSSMGTRRAGVLYGGPGATFGAGHGY 584
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,554,468
Number of extensions: 556018
Number of successful extensions: 1478
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1464
Number of HSP's successfully gapped: 7
Length of query: 550
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 444
Effective length of database: 11,501,117
Effective search space: 5106495948
Effective search space used: 5106495948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)