Os09g0248200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Frigida-like family protein.
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Os09g0248200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Frigida-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.25 | 0.201 | 12.7 | 0.921 | 0.271 | -0.331 | 0.215 | -1.07 | 0.189 | 20.3 | 24.6 | 1612 | -- | -- |
| 19.23 | 0.204 | 12.7 | 0.725 | 0.251 | -0.222 | 0.198 | -- | 0.156 | 20.1 | 40.12 | 2263 | -- | -- |
| 18.39 | 0.2 | 12.7 | 0.911 | 0.269 | -0.32 | -- | -1.03 | 0.187 | 20.3 | 24.8 | 1687 | -- | -- |
| 19.35 | 0.205 | 12.7 | 0.715 | 0.251 | -0.222 | -- | -- | 0.153 | 20.1 | 37.7 | 2254 | -- | -- |
| 20.55 | 0.211 | 12.7 | 0.858 | -- | -0.431 | -- | -0.977 | 0.172 | -- | 35.1 | 618 | -- | -- |
| 20.14 | 0.21 | 12.7 | 0.802 | 0.272 | -- | 0.205 | -- | 0.197 | 20.3 | -- | -- | -- | -- |
| 20.27 | 0.211 | 12.7 | 0.796 | 0.271 | -- | -- | -- | 0.197 | 20.3 | -- | -- | -- | -- |
| 21.25 | 0.215 | 12.7 | 0.689 | -- | -0.448 | -- | -- | 0.128 | -- | 48.87 | 604 | -- | -- |
| 21.1 | 0.214 | 12.7 | -- | 0.267 | -0.641 | -- | -- | -0.0832 | 20.2 | 64.81 | 47520 | -- | -- |
| 24.36 | 0.231 | 12.7 | 0.794 | -- | -- | -- | -- | 0.194 | -- | -- | -- | -- | -- |
| 36.97 | 0.284 | 12.7 | -- | 0.268 | -- | -- | -- | 0.108 | 20.6 | -- | -- | -- | -- |
| 25.01 | 0.233 | 12.7 | -- | -- | -0.643 | -- | -- | -0.0865 | -- | 72.73 | 47520 | -- | -- |
| 41 | 0.299 | 12.7 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.87 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 2 | 17.91 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 3 | 17.93 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 4 | 17.95 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 7 | 17.99 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 10 | 18.02 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 13 | 18.03 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 3 |
| 15 | 18.03 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 16 | 18.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 22 | 18.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 29 | 18.06 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 12 |
| 31 | 18.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 33 | 18.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 40 | 18.08 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 43 | 18.09 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 70 | 18.13 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 77 | 18.14 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 81 | 18.14 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 88 | 18.16 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 107 | 18.18 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 109 | 18.18 | temperature | 10 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 111 | 18.19 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 133 | 18.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 141 | 18.23 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 6 | 1 |
| 145 | 18.23 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 151 | 18.23 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 159 | 18.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 171 | 18.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 6 |
| 201 | 18.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 264 | 18.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 265 | 18.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 324 | 18.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 18 |
| 352 | 18.30 | radiation | 10 | 30 | < th | dose independent | rect. | 6 | 1 |
| 385 | 18.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 21 |
| 414 | 18.31 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 448 | 18.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 450 | 18.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 513 | 18.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 536 | 18.33 | wind | 3 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 608 | 18.34 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 630 | 18.35 | wind | 1 | 43200 | < th | dose independent | sin | 9 | NA |
| 643 | 18.35 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 714 | 18.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 15 |
| 730 | 18.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 788 | 18.38 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 848 | 18.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 986 | 18.41 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 13 |