BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0248200 Os09g0248200|AK107545
(540 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0248200 Frigida-like family protein 1119 0.0
Os09g0248300 Frigida-like family protein 1000 0.0
Os07g0592300 Frigida-like family protein 300 2e-81
Os03g0794900 Frigida-like family protein 142 7e-34
Os07g0173200 Frigida-like family protein 133 3e-31
Os01g0181000 Frigida-like family protein 106 5e-23
Os03g0588200 Frigida-like family protein 93 5e-19
Os03g0588600 Frigida-like family protein 69 7e-12
>Os09g0248200 Frigida-like family protein
Length = 540
Score = 1119 bits (2895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/540 (100%), Positives = 540/540 (100%)
Query: 1 MSDMESMATLMESTGSKLQQLQRAFAELESQSAVSLNLKWKQLEDHFHGLEQSLKKKFDD 60
MSDMESMATLMESTGSKLQQLQRAFAELESQSAVSLNLKWKQLEDHFHGLEQSLKKKFDD
Sbjct: 1 MSDMESMATLMESTGSKLQQLQRAFAELESQSAVSLNLKWKQLEDHFHGLEQSLKKKFDD 60
Query: 61 LKRQEEEFEETVAKSEQMLEQQEAVVVAKELTSLEKLQQKRDAALAVIFGKSKLNLSTPL 120
LKRQEEEFEETVAKSEQMLEQQEAVVVAKELTSLEKLQQKRDAALAVIFGKSKLNLSTPL
Sbjct: 61 LKRQEEEFEETVAKSEQMLEQQEAVVVAKELTSLEKLQQKRDAALAVIFGKSKLNLSTPL 120
Query: 121 INPISKSVNNNAVFNGNIGGSLSVKWPKPATAHGAYLQDENTAVKPRSQLVVLCEEMNVN 180
INPISKSVNNNAVFNGNIGGSLSVKWPKPATAHGAYLQDENTAVKPRSQLVVLCEEMNVN
Sbjct: 121 INPISKSVNNNAVFNGNIGGSLSVKWPKPATAHGAYLQDENTAVKPRSQLVVLCEEMNVN 180
Query: 181 GLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGV 240
GLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGV
Sbjct: 181 GLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGV 240
Query: 241 RRTCLMLMESLAQLQTDATTGFISEGQVLTASIKERAKKIALEWKSKLDSLDFDASNGNC 300
RRTCLMLMESLAQLQTDATTGFISEGQVLTASIKERAKKIALEWKSKLDSLDFDASNGNC
Sbjct: 241 RRTCLMLMESLAQLQTDATTGFISEGQVLTASIKERAKKIALEWKSKLDSLDFDASNGNC 300
Query: 301 LEAHAFLQLLATFGIFAEFAQDELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVLVEN 360
LEAHAFLQLLATFGIFAEFAQDELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVLVEN
Sbjct: 301 LEAHAFLQLLATFGIFAEFAQDELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVLVEN 360
Query: 361 GRTIDAINLAYAFELTNQFEPVELLKAYLQEVKSVPHFKTGKISLQVQNEMNERELSALK 420
GRTIDAINLAYAFELTNQFEPVELLKAYLQEVKSVPHFKTGKISLQVQNEMNERELSALK
Sbjct: 361 GRTIDAINLAYAFELTNQFEPVELLKAYLQEVKSVPHFKTGKISLQVQNEMNERELSALK 420
Query: 421 AAIKCIEEHKLDEKYPIDLLQKRVIQLEKAKADKRRAVEAAKPQSKRPRANGSVYAPHTS 480
AAIKCIEEHKLDEKYPIDLLQKRVIQLEKAKADKRRAVEAAKPQSKRPRANGSVYAPHTS
Sbjct: 421 AAIKCIEEHKLDEKYPIDLLQKRVIQLEKAKADKRRAVEAAKPQSKRPRANGSVYAPHTS 480
Query: 481 FPDKSFYQAAPPQRHSYPYERQYVYGAEAHHHPTMISSAPYGISPAHTTYYEKDGEPNRG 540
FPDKSFYQAAPPQRHSYPYERQYVYGAEAHHHPTMISSAPYGISPAHTTYYEKDGEPNRG
Sbjct: 481 FPDKSFYQAAPPQRHSYPYERQYVYGAEAHHHPTMISSAPYGISPAHTTYYEKDGEPNRG 540
>Os09g0248300 Frigida-like family protein
Length = 542
Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/532 (91%), Positives = 507/532 (95%), Gaps = 5/532 (0%)
Query: 1 MSDMESMATLMESTGSKLQQLQRAFAELESQSAVSLNLKWKQLEDHFHGLEQSLKKKFDD 60
MSDMESM LMESTGSKLQ LQRAFAELESQSAVSLNLKWKQLEDHFHGLEQSLKKKFD+
Sbjct: 1 MSDMESMTALMESTGSKLQLLQRAFAELESQSAVSLNLKWKQLEDHFHGLEQSLKKKFDE 60
Query: 61 LKRQEEEFEETVAKSEQMLEQQEAVVVAKELTSLEKLQQKRDAALAVIFGKSKLNLSTPL 120
LK QE+EF+ETV KSEQMLEQQEA VVAKELTSLE+LQQKRDAALA+IFGKSKLNLS P+
Sbjct: 61 LKEQEKEFKETVTKSEQMLEQQEAAVVAKELTSLERLQQKRDAALAMIFGKSKLNLSMPV 120
Query: 121 INPISKSVNNNAVFNGNIGGSLSVKWPKPATAHGAYLQDENTAVKPRSQLVVLCEEMNVN 180
INPISKSV+NNAV NGNI SL WPKPATAHGAYLQD NTAVKPRSQLV+LCEEMNVN
Sbjct: 121 INPISKSVSNNAVLNGNIA-SL---WPKPATAHGAYLQDGNTAVKPRSQLVILCEEMNVN 176
Query: 181 GLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGV 240
GLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGV
Sbjct: 177 GLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDGNLLGV 236
Query: 241 RRTCLMLMESLAQLQTDATTGFISEGQVLTASIKERAKKIALEWKSKLDSLDFDASNGNC 300
RRTCLMLMESLAQLQTDATTGFIS+GQ+LTASIKERAKKIALEWKSKLDSLDFDASNGNC
Sbjct: 237 RRTCLMLMESLAQLQTDATTGFISKGQMLTASIKERAKKIALEWKSKLDSLDFDASNGNC 296
Query: 301 LEAHAFLQLLATFGIFAEFAQDELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVLVEN 360
LEAHAFLQLLATF IF+EFA+DELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVL+EN
Sbjct: 297 LEAHAFLQLLATFAIFSEFAEDELCKLLPSVSRRRQTPELCRILGLSQNMPGVIGVLIEN 356
Query: 361 GRTIDAINLAYAFELTNQFEPVELLKAYLQEVKSVPHFKTGKISLQVQNEMNERELSALK 420
GRTIDAINLAYAFELT+QFEPVELLKAYL+EVKS+ H KTGK+S VQNE+NERELSALK
Sbjct: 357 GRTIDAINLAYAFELTDQFEPVELLKAYLKEVKSMSHVKTGKMSPGVQNEINERELSALK 416
Query: 421 AAIKCIEEHKLDEKYPIDLLQKRVIQLEKAKADKRRAVEAAKPQSKRPRANGSVYAPH-T 479
A IKCIEEHKLDEKYPID LQ+RVIQLEKAKADKRRAVEA KPQSKRPRANGSVYAPH T
Sbjct: 417 AVIKCIEEHKLDEKYPIDPLQRRVIQLEKAKADKRRAVEAGKPQSKRPRANGSVYAPHIT 476
Query: 480 SFPDKSFYQAAPPQRHSYPYERQYVYGAEAHHHPTMISSAPYGISPAHTTYY 531
SF DKSFYQAA PQRHSYPYERQYVYGAEAHHHPTMISSAPYG+SPAHTTYY
Sbjct: 477 SFSDKSFYQAAAPQRHSYPYERQYVYGAEAHHHPTMISSAPYGMSPAHTTYY 528
>Os07g0592300 Frigida-like family protein
Length = 608
Score = 300 bits (767), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 191/481 (39%), Positives = 279/481 (58%), Gaps = 13/481 (2%)
Query: 3 DMESMATLMESTGSKLQQLQRAFAELESQSAVSLNLK----WKQLEDHFHGLEQSLKKKF 58
D ++ EST L+QL F +L+S + SL L+ W+ ++ HF LE+S K K
Sbjct: 5 DTSHISGSSESTIPLLEQLAEVFGKLKSHTETSLQLQNGINWEDIKAHFLNLEKSYKSKC 64
Query: 59 DDLKRQEEEFEETVAKSEQMLEQQEAVVVAKELTSLEKLQQKRD---AALAVIFGKSKLN 115
D+L +++ EE A+S +++ ++EA V AKE L + Q+ RD +AL+ + K K+
Sbjct: 65 DELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALSEVRQKYKVE 124
Query: 116 LSTPLINPISKSVNNNAVFNGNIGGSLSVKWPKPATAHGAYLQDENTAVKPRSQLVVLCE 175
L+ L SK N ++ + + A+ G + VKPR L LCE
Sbjct: 125 LAGILDANGSKDKKVRTSTN-DMNALCASEENTTASGLGEPSEASPVDVKPRPVLKQLCE 183
Query: 176 EMNVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGKKDG 235
+M+ GL KF+S+N K L+S+R+E+ ALR ATDP VL SLE F+ D+ G K
Sbjct: 184 QMDTAGLLKFLSENWKKLSSLRDELSAALRCATDPARFVLGSLEGFFPSDHTSSPGNKQI 243
Query: 236 NLLGVRRTCLMLMESLAQLQTDATTGFISEGQVLTASIKERAKKIALEWKSKLDSLDFDA 295
L G RR+C++LME++ G + ++ I+E AK IA EWKSKL +D DA
Sbjct: 244 ILQGQRRSCIILMEAITPALATKEPG---DNHPWSSEIRELAKAIAEEWKSKLAEVDLDA 300
Query: 296 SNGNCLEAHAFLQLLATFGIFAEFAQDELCKLLPSVSRRRQTPELCRILGLSQNMPGVIG 355
S+G LEA AFLQLL TF + + +DELCKL+ +VSRR+QT ELCR L L++ +P +I
Sbjct: 301 SDGYSLEAQAFLQLLTTFNVDSVLDEDELCKLVVAVSRRKQTAELCRSLCLNERIPDIIK 360
Query: 356 VLVENGRTIDAINLAYAFELTNQFEPVELLKAYLQEVKSVPHFKTGKISLQVQNEMNERE 415
LV R IDA+ +AF L+ F P LLK Y++E+K + ++++ RE
Sbjct: 361 ELVNRHRQIDAVQFIHAFGLSESFPPAPLLKTYVEELKDSLGNNGDGNAASLKDDPKTRE 420
Query: 416 LSALKAAIKCIEEHKLDEKYPIDLLQKRVIQLEKAKADKRRAVEAAKPQSKRPRANGSVY 475
L AL+A IKCIEE+KL + YP+ LQKRV +L K+K +K R +EA + +K+PR G+
Sbjct: 421 LLALRAVIKCIEEYKLQKDYPLGPLQKRVAEL-KSKGEK-RPLEAGRHNAKKPRTFGNSA 478
Query: 476 A 476
A
Sbjct: 479 A 479
>Os03g0794900 Frigida-like family protein
Length = 550
Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 147/278 (52%), Gaps = 10/278 (3%)
Query: 170 LVVLCEEMNVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLIL 229
L LC M+ G F+ RK++ ++R E+P AL+ DP + ++ + + D +
Sbjct: 126 LRSLCASMDSAGFFTFVVARRKEVDALRAELPDALKRCVDPARFAMDAVSEVFPIDKRAV 185
Query: 230 DGKKDGNLLGVRRTCLMLMESLAQLQTDATTGFISEGQVLTASIKERAKKIALEWKSKLD 289
D + C++++E++ D + ++ + +ERA+ +A EWK +
Sbjct: 186 RSPTD-----LAWACVLILEAVVPSLADPDPEIGAARPMVPQAARERARGMAREWKDAAE 240
Query: 290 SLDFDASNGNCLEAHAFLQLLATFGIFAEFAQDELCKLLPSVSRRRQTPELCRILGLSQN 349
+AHAFLQ +ATF + + ++ +++ S S RRQ P L LGL
Sbjct: 241 KKG-GVEGAKPPDAHAFLQHVATFAVAEKEDKELYRRIVVSFSWRRQMPRLAITLGLEDE 299
Query: 350 MPGVIGVLVENGRTIDAINLAYAFELTNQFEPVELLKAYLQEVKSVPHFKTGKISL---Q 406
M +I L+ G+ +DA+N AY L +F P LLKAYL++ K +P + +S Q
Sbjct: 300 MDDIIEELITKGQQLDAVNFAYEAGLQEKFPPAPLLKAYLEDSKKIPS-NSDNLSTSTGQ 358
Query: 407 VQNEMNERELSALKAAIKCIEEHKLDEKYPIDLLQKRV 444
+ N++E SAL+A IKC+E+HKL+ ++P++ L++R+
Sbjct: 359 SGSNANKKEQSALRAVIKCVEDHKLEAEFPLEDLRERL 396
>Os07g0173200 Frigida-like family protein
Length = 453
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 146/289 (50%), Gaps = 25/289 (8%)
Query: 170 LVVLCEEMNVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLIL 229
L +C M+ G F+ RK++ ++R E+P AL+ DP V+ ++ D + +
Sbjct: 113 LRAMCARMDSAGFFGFVVARRKEVDALRAEMPPALKCCVDPAKFVMDAVADVF-----PV 167
Query: 230 DGKKDGNLLGVRRTCLMLMESLAQLQTDATTGFISEGQVLTASIKERAKKIALEWKSKLD 289
D ++ N + C++++E+ D + ++ + +ERA+ +A EWK +
Sbjct: 168 DRREAKNPTDLAWACVLILEAAVPALADPDPEIGAARLLVPRAARERARGMAREWKEAAE 227
Query: 290 SLDFDASNGNCLEAHAFLQLLATFGIFAEFAQDELCKLLPSVSRRRQTPELCRILGLSQN 349
+AHAFLQ +ATF + + +++ S S RRQ P L LGL ++
Sbjct: 228 R-KGGVEWTKPPDAHAFLQHVATFAVAEREDRGIYRRIVVSFSWRRQMPRLALTLGLEED 286
Query: 350 MPGVIGVLVENGRTIDAINLAYAFELTNQFEPVELLKAYLQEVKSVPHFKTGKISLQVQN 409
M +I L+ G+ +DA+N AY L +F PV LLK+YL + K K S V +
Sbjct: 287 MADIIEELIAKGQQLDAVNFAYEAGLQEKFPPVPLLKSYLADSK--------KTSCTVSD 338
Query: 410 EM-----------NERELSALKAAIKCIEEHKLDEKYPIDLLQKRVIQL 447
N++E S L+A IKCIE+ KL+ ++P++ LQ+++ +L
Sbjct: 339 NSSTSSGQSGSNANKKEQSVLRAVIKCIEDRKLEAEFPLEDLQRQLEEL 387
>Os01g0181000 Frigida-like family protein
Length = 606
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 123/256 (48%), Gaps = 29/256 (11%)
Query: 294 DASNGNCLEAHAFLQLLATFGIFAEFAQDELCKLLPSVSRRRQTPELCRILGLSQNMPGV 353
+ G E FLQ++A FG+ + D L +LL RRR+ + +LG ++ V
Sbjct: 326 EGEKGGQAEVQIFLQMVAAFGLKDRYDVDFLRRLLVDNGRRRELARIACVLGFEDSLRDV 385
Query: 354 IGVLVENGRTIDAINLAYAFELTNQFEPVELLKAYLQEV--KSVPHFKTGKISLQVQNEM 411
I +++G I+AI++A+ L +F PV LLK+Y++ + K+ + G+ S V E
Sbjct: 386 IEEFIKSGNEIEAIHIAHEAGLLERFPPVPLLKSYIKRITNKTQVALRGGRHSNSVVEEA 445
Query: 412 NERELSALKAAIKCIEEHKLDEKYPIDLLQKRVIQLEKAKADKR------------RAVE 459
N E +A K+ I+C+E +L + +D ++K+V ++EK KAD+R RA
Sbjct: 446 NNSECNAYKSIIRCVETCQLTSAFNLDGIRKKVARMEKEKADRRKPSGMNRFQNNKRARG 505
Query: 460 AAKPQSKRP----RANGSVYAPHTSFPDKSFYQAAPPQRHSYPY-ERQYVYGAEAHHHPT 514
A+ PQS P R + S Y +SF + P HS+PY +R G P
Sbjct: 506 ASGPQSFPPSKYSRGSNSNYG--SSFRN--------PASHSFPYTDRAGFVGPAPGARPH 555
Query: 515 MISSAPYGISPAHTTY 530
+ G A Y
Sbjct: 556 FAPGSSMGTRRAGVLY 571
>Os03g0588200 Frigida-like family protein
Length = 798
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 25/224 (11%)
Query: 173 LCEEMNVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGK 232
+C M+V GL K + N+ + E PV +R A D LVL ++ F + K
Sbjct: 305 VCAGMDVRGLLKLVCKNQS--ICLWHEYPVVMRHAPDAAALVLQVVQGFLLSKKMKTT-K 361
Query: 233 KDGNLLGVRRTCLMLMESLAQLQTDATTGFISEGQVLTASIKERAKKIALEWKSKLDSLD 292
GN +G+ R CL + + L++ ++AK++A +WK +DS
Sbjct: 362 VWGNCVGLIR-CLPAVNA-----------------SLSSDTMKQAKQLAKDWKEMIDSTG 403
Query: 293 FDASNGNCLEAHAFLQLLATFGIFAEFAQDELCKLLPSVSRRRQTP---ELCRILGLSQN 349
N L + L L ++ I +EF+ DE+ + ++SR++Q ELC+ LGL
Sbjct: 404 SSRDVLN-LSSWGLLYFLISYNIVSEFSVDEIFCIFGTLSRKQQKKNCIELCKGLGLVNR 462
Query: 350 MPGVIGVLVENGRTIDAINLAYAFELTNQFEPVELLKAYLQEVK 393
+ +I L+ NG+ ++A+ L AF L +++ P+ LLK Y++ K
Sbjct: 463 ITDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVERAK 506
>Os03g0588600 Frigida-like family protein
Length = 670
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 109/234 (46%), Gaps = 25/234 (10%)
Query: 243 TCLMLMESLAQLQTDATTGFISEGQVLTASIKERAKKIALEWKSKLDSLDFDASNGNCLE 302
+C+ L+ + +L + G + E+A ++A +WK + + + N L
Sbjct: 331 SCVELLSCVPKLAVAPSPGTM-----------EQANRLAEDWKEMIGRTESCSMNLGRLA 379
Query: 303 AHAFLQLLATFGIFAEFAQDELCKLLPSV--SRRRQTPELCRILGLSQNMPGVIGVLVEN 360
L L ++ I EF +E+ ++ +++ LC+ LGL M +G L+E+
Sbjct: 380 VWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDDKKQCCISLCKYLGLIDKMADSVGHLIEH 439
Query: 361 GRTIDAINLAYAFELTNQFEPVELLKAYLQEVKSVPHFKTGKISLQVQNEMNERELS--- 417
G+ + AI LA LT+++ P+ +++ Y+Q K +T + L ++++ +LS
Sbjct: 440 GQQLVAIRLACTLNLTDKYTPLSIMEDYIQNAK-----ETAQEILSMESDSESLKLSMSK 494
Query: 418 ---ALKAAIKCIEEHKLDEKYPIDLLQKRVIQLEKAKADKRRAVEAAKPQSKRP 468
AL + + + E +D + D ++ + QL A+KR ++E + P
Sbjct: 495 QVNALILSWRVVGECNIDSVH-CDRIKAEITQLLHKYANKRHSLEELPSDTSSP 547
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,187,592
Number of extensions: 698469
Number of successful extensions: 2566
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 2551
Number of HSP's successfully gapped: 9
Length of query: 540
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 434
Effective length of database: 11,501,117
Effective search space: 4991484778
Effective search space used: 4991484778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)