Os03g0588200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Frigida-like family protein.
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Os03g0588200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Frigida-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.66 | 0.214 | 10.9 | 0.00746 | 0.172 | 0.199 | -0.701 | 1.71 | 0.183 | 5.6 | 20.05 | 1520 | -- | -- |
| 23.7 | 0.227 | 11 | -0.501 | 0.152 | 0.294 | -0.529 | -- | 0.0507 | 4.87 | 19.73 | 2735 | -- | -- |
| 21.6 | 0.216 | 10.9 | -0.0155 | 0.193 | 0.235 | -- | 1.78 | 0.178 | 5.41 | 19.87 | 1895 | -- | -- |
| 24.16 | 0.229 | 11 | -0.531 | 0.203 | 0.317 | -- | -- | 0.0527 | 6.27 | 23.3 | 2145 | -- | -- |
| 23.32 | 0.225 | 10.9 | 0.0196 | -- | 0.18 | -- | 1.71 | 0.196 | -- | 20.4 | 1513 | -- | -- |
| 26.28 | 0.24 | 11 | -0.399 | 0.185 | -- | -0.648 | -- | 0.109 | 5.55 | -- | -- | -- | -- |
| 27.29 | 0.245 | 11 | -0.403 | 0.182 | -- | -- | -- | 0.112 | 5.05 | -- | -- | -- | -- |
| 25.58 | 0.236 | 11 | -0.51 | -- | 0.292 | -- | -- | 0.0636 | -- | 23.7 | 2846 | -- | -- |
| 29.74 | 0.254 | 10.9 | -- | 0.182 | 0.246 | -- | -- | 0.196 | 5.75 | 29.21 | 2084 | -- | -- |
| 29.02 | 0.252 | 11 | -0.396 | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
| 31.56 | 0.263 | 11 | -- | 0.175 | -- | -- | -- | 0.157 | 5.13 | -- | -- | -- | -- |
| 31.03 | 0.259 | 10.9 | -- | -- | 0.239 | -- | -- | 0.207 | -- | 29.7 | 4327 | -- | -- |
| 33.16 | 0.269 | 11 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 12 |
| 10 | 20.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 9 |
| 16 | 20.43 | temperature | 25 | 1440 | > th | dose independent | sin | 6 | NA |
| 22 | 20.47 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 27 | 20.49 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 9 |
| 58 | 20.58 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 63 | 20.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 8 |
| 70 | 20.60 | temperature | 25 | 1440 | < th | dose independent | sin | 6 | NA |
| 75 | 20.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 85 | 20.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 114 | 20.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 132 | 20.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 146 | 20.66 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 201 | 20.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 22 |
| 216 | 20.70 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 242 | 20.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 289 | 20.74 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 311 | 20.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 381 | 20.80 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 384 | 20.80 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 386 | 20.80 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 461 | 20.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 477 | 20.85 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 479 | 20.85 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 497 | 20.86 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 520 | 20.87 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 564 | 20.88 | temperature | 30 | 1440 | < th | dose dependent | sin | 4 | NA |
| 586 | 20.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 643 | 20.91 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 11 |
| 729 | 20.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 21 |
| 760 | 20.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 19 |
| 892 | 20.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 19 |
| 929 | 20.96 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 931 | 20.96 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 981 | 20.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 21 |