BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0588200 Os03g0588200|AK120221
(798 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48385.1 | chr5:19609471-19611712 FORWARD LENGTH=559 101 1e-21
AT3G22440.1 | chr3:7959854-7961886 FORWARD LENGTH=533 88 1e-17
AT5G16320.1 | chr5:5344507-5345919 FORWARD LENGTH=471 84 3e-16
AT4G14900.1 | chr4:8521759-8523607 REVERSE LENGTH=533 83 5e-16
AT1G31814.1 | chr1:11412985-11414406 REVERSE LENGTH=474 74 3e-13
AT5G27230.1 | chr5:9584255-9587838 FORWARD LENGTH=949 53 7e-07
>AT5G48385.1 | chr5:19609471-19611712 FORWARD LENGTH=559
Length = 558
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 27/231 (11%)
Query: 301 HLRGVCAGMDVRGLLKLVCKNQS--ICLWHEYPVVMRHAPDAAALVLQVVQGFL-----L 353
L +C MD GL K V N+ L E P+ R A + A+LVL ++GF
Sbjct: 174 QLLKLCGDMDSTGLHKFVSDNRKNLASLKEEIPMAFRAAANPASLVLDSLEGFYPMEAPT 233
Query: 354 SKKMKTTKVWG---NCVGLIRCLP---------AVNASLSSDTMKQAKQLAKDWKEMIDS 401
+ K + G C+ L+ CL + LS + +AK +A+ W +++S
Sbjct: 234 ADGKKDANLLGMRRTCIMLMECLSILLSGLDRNCLAVVLSQNVKHRAKTIAEGWNPLLES 293
Query: 402 TGSSRDVLN---LSSWGLLYFLISYNIVSEFSVDEIFCIFGTLSRKQQKKNCIELCKGLG 458
D N L + L L ++ IV++F DE+ + +SR++Q ELC+ LG
Sbjct: 294 L--DMDACNGNSLEAHAFLQLLATFAIVADFKEDELLKLIPMVSRRRQ---AAELCRSLG 348
Query: 459 LVNRITDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVERAKQNA 509
L ++ +I+ L+ +G+Q++A+ L AF L ++++P+SLLK Y+ A++++
Sbjct: 349 LAEKMPGVIEVLVNSGKQIDAVNLAFAFELTEQFSPVSLLKSYLIEARRSS 399
>AT3G22440.1 | chr3:7959854-7961886 FORWARD LENGTH=533
Length = 532
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 139/295 (47%), Gaps = 23/295 (7%)
Query: 302 LRGVCAGMDVRGLLKLVC--KNQSICLWHEYPVVMRHAPDAAALVLQVVQGFLL--SKKM 357
L+ +C MD RG V K + L + P + D A LVL+ + ++
Sbjct: 131 LKSLCLKMDARGFWNFVTARKKELENLRSKIPAALVDCVDPAMLVLEAISEVFPVDTRGD 190
Query: 358 KTTKVWG-NCVGLIRCL------PAVNAS---LSSDTMKQAKQLAKDWKEMIDSTGSSRD 407
K + +G CV ++ L P + S ++ ++AK++A+ WK+ ++ G +
Sbjct: 191 KVSNDYGWACVVILESLTPVIVDPVIGKSRLLVTPSVKEKAKEIAETWKKSLEERGRIEN 250
Query: 408 VLNLSSWGLLYFLISYNIV-SEFSVDEIFCIFGTLSRKQQKKNCIELCKGLGLVNRITDL 466
V L L+++ IV SE + G+ RKQ K L +GL +++ D+
Sbjct: 251 VKTPDVHTFLQHLVTFGIVKSEDLALYRKLVVGSAWRKQMPK----LAVSVGLGDQMPDM 306
Query: 467 IDYLIGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVERAKQNALDIINMNSPRKSLSPLI 526
I+ LI GQQL+A+ T L+DK+ P+ LLK Y+ AK++A I+ +S + L+
Sbjct: 307 IEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAYLRDAKKSAASIMEDSSNTGRATHLV 366
Query: 527 TKEVDSLMVAQNIVQQQITDFNVRSGMLAE-MKKLLDQYATKRSSGDACSASTSN 580
++ S + A V + I ++ + E +KK LDQ ++ +A +N
Sbjct: 367 ARKEQSALKA---VLKCIEEYKLEEEFPPENLKKRLDQLEKTKTEKRKPAAVPAN 418
>AT5G16320.1 | chr5:5344507-5345919 FORWARD LENGTH=471
Length = 470
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 123/254 (48%), Gaps = 16/254 (6%)
Query: 296 PSCSDHLRGVCAGMDVRGLLKLVCK--NQSICLWHEYPVVMRHAPDAAALVLQVVQG--F 351
P LR +C +D GL+K + + + L E +R++PD A++VL ++G +
Sbjct: 95 PVVEPELRALCEKIDGIGLIKYLIRIWDDETPLNQEVSAAIRYSPDTASMVLDAIEGSNY 154
Query: 352 LLSKKMKTTKVWGNCVGLIRCLPAVNASLSSDTMKQAKQLAKDWKEMIDSTGSSRDVLNL 411
S ++ V V L+ L +NA+++ DT +AK+LA WK + V
Sbjct: 155 TPSSSGRSFDVRRVFVLLMEVLIEINANITVDTRNRAKKLAYHWKSKV-------GVKPF 207
Query: 412 SSWGLLYFLISYNIVSEFSVDEIFCIFGTLSRKQQKKNCIELCKGLGL-VNRITDLIDYL 470
+ L+ + ++ + SEF +E+ +++ +Q +C +G+ R+ LI L
Sbjct: 208 EALVFLHLVAAFELGSEFDTEELSDYVFMIAKYKQ---ATLVCNKIGVDRKRVGKLIKTL 264
Query: 471 IGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVERAKQNALDI-INMNSPRKSLSPLITKE 529
+ +G+ + A+ + D++ P+ +LK Y++ ++ AL + + N KS + KE
Sbjct: 265 LDSGKPILAVKFMYECGMTDEFEPIPVLKSYIKDCREAALRVCVEDNYSLKSQNEASDKE 324
Query: 530 VDSLMVAQNIVQQQ 543
V +L I++ Q
Sbjct: 325 VSALKPLIKIIKDQ 338
>AT4G14900.1 | chr4:8521759-8523607 REVERSE LENGTH=533
Length = 532
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 149/329 (45%), Gaps = 38/329 (11%)
Query: 258 ETMEAKSEEQNEAKVTSMEHDIEEGDEKASREQGNRALPSCSDHLRGVCAGMDVRGLLKL 317
E E K EE+ A + S+E + GDE L S L+ +C MD RG
Sbjct: 86 EIAEGKVEERVRAALDSLEKARDCGDEDTGEVDDGDGLLSA---LKSLCLKMDARGFWGF 142
Query: 318 VC--KNQSICLWHEYPVVMRHAPDAAALVLQVV-QGFLLSKKMKTTKV-----WGNCVGL 369
V K + L + PV + D LVL+ V + F + K+ KV W CV +
Sbjct: 143 VIARKKELENLRSQIPVALVDCVDPPKLVLEAVSEVFPVDKRGGGEKVSNDFGWA-CVVI 201
Query: 370 IRCL------PAVNAS---LSSDTMKQAKQLAKDWKEMIDSTGSSRDVLNLSSWGLLYFL 420
+ L P + S ++ ++AK++A+ WK ++ G +V L L
Sbjct: 202 LESLIPVMVDPVMGKSRLLVTPSVKEKAKEIAETWKASLEERGGIENVKTPDVHTFLQHL 261
Query: 421 ISYNIVSEFSVDEIFC----IFGTLSRKQQKKNCIELCKGLGLVNRITDLIDYLIGNGQQ 476
+++ IV + D++ + G+ RKQ K L +GL +++ D+I+ LI GQQ
Sbjct: 262 VTFGIVKK---DDLALYRKLVVGSAWRKQMPK----LAVSVGLGDQMPDMIEELIIRGQQ 314
Query: 477 LEALLLTQAFNLIDKYTPLSLLKGYVERAKQ-NALDIINMNSPRKSLSPLITKEVDSLMV 535
L+A+ T L+ + P+ LLK Y+ AK+ AL + N+ +S + KE +L
Sbjct: 315 LDAVHFTFEVGLVHLFPPVPLLKAYLRDAKKATALITDDSNNSGRSAHLVARKEQSAL-- 372
Query: 536 AQNIVQQQITDFNVRSGMLAE-MKKLLDQ 563
V + I ++ + E +KK LDQ
Sbjct: 373 --RAVLKCIEEYKLEEEFPPENLKKRLDQ 399
>AT1G31814.1 | chr1:11412985-11414406 REVERSE LENGTH=474
Length = 473
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 139/293 (47%), Gaps = 35/293 (11%)
Query: 296 PSCSDHLRGVCAGMDVRGLLKLVCKN--QSICLWHEYPVVMRHAPDAAALVLQVVQG--- 350
P LR C D +GL + +N + + + E P +R + + A LVL ++G
Sbjct: 84 PVLWPELRKFCEKNDGKGLGNYMIENSRKRLSINEELPNAIRCSENPAPLVLDAIEGSYH 143
Query: 351 ------FLLSKKMKTTKVWGNCVGLIRCLPAVNASLSSDTMKQAKQLAKDWKEMIDSTGS 404
++ + +++ V L+ L +NA+L++D ++A+ +A DWK I + S
Sbjct: 144 CSSPSSSSSARAIDVKRIF---VLLLEALIEINANLTNDLRERARTIAYDWKPNIGNKPS 200
Query: 405 SRDVLNLSSWGLLYFLISYNIVSEFSVDEIFCIFGTLSRKQQKKNCIELCKGLGL-VNRI 463
+ G L+ + ++ + S FS +EI C + L K ++ I CK +GL NRI
Sbjct: 201 -------EALGFLHLVAAFELGSLFSTEEI-CDYIFLISKYKQATTI--CKKIGLDRNRI 250
Query: 464 TDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVERAKQNALDI-INMNSPRKSL 522
L+ + G+ L A+ ++ ++ P+S+LK ++ +++ A + N K
Sbjct: 251 GVLVQKFLDTGRLLVAIRFIYENEMVGEFEPVSILKTSLKNSREAAKRVCAEGNYSLKVQ 310
Query: 523 SPLITKEVDSLMVAQNIVQQQITDFNVRSGMLAE-----MKKLLDQYATKRSS 570
+ KE+ +L +V+++ N+ S + E +K+L DQ A ++ +
Sbjct: 311 NEATDKELSALRAVIKVVKEK----NIESEFMEEKLEECVKELEDQKAQRKRA 359
>AT5G27230.1 | chr5:9584255-9587838 FORWARD LENGTH=949
Length = 948
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 388 AKQLAKDWKEMIDSTGSSRDVLNLSSWGLLYFLISYNIVSEFSVDEIFCIFGTLSRKQQK 447
AK+LA WK+ I S RD L + + L FL + IVSEF D++ G L +
Sbjct: 631 AKKLAVYWKDKI--AKSKRDQLEVICF--LQFLGIFGIVSEFKADDLL---GLLDNSYWQ 683
Query: 448 KNCIELCKGLGLVNRITDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLSLL 498
+LC+ LGL + I I LI G +++A+ +F ++ ++ P+S +
Sbjct: 684 TVSPDLCQFLGLDDAIPGFIQNLIKTGHRIKAIDYIYSFGMVHRFQPVSAI 734
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,493,981
Number of extensions: 374932
Number of successful extensions: 1445
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1438
Number of HSP's successfully gapped: 6
Length of query: 798
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 691
Effective length of database: 8,173,057
Effective search space: 5647582387
Effective search space used: 5647582387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)