BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0588200 Os03g0588200|AK120221
(798 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0588200 Frigida-like family protein 874 0.0
Os03g0588600 Frigida-like family protein 184 3e-46
Os09g0248300 Frigida-like family protein 96 1e-19
Os09g0248200 Frigida-like family protein 93 7e-19
Os07g0592300 Frigida-like family protein 91 4e-18
>Os03g0588200 Frigida-like family protein
Length = 798
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/568 (77%), Positives = 442/568 (77%)
Query: 26 LHGLPVEMTTGEMXXXXXXXXXXXXXXREAFDVLAACSPFPLPFAWGDLDSYISSLQSSI 85
LHGLPVEMTTGEM REAFDVLAACSPFPLPFAWGDLDSYISSLQSSI
Sbjct: 26 LHGLPVEMTTGEMEAAIAALPAKKEALREAFDVLAACSPFPLPFAWGDLDSYISSLQSSI 85
Query: 86 DRRFGQLRVLEXXXXXXXXXXXXSTSDGEKGGKQXXXXXXXXXXXXXXXXXXXXXXXXXX 145
DRRFGQLRVLE STSDGEKGGKQ
Sbjct: 86 DRRFGQLRVLEAARPALAGPAAASTSDGEKGGKQEEDSDEEEKEEEEEEVEEEEVEEEEE 145
Query: 146 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQGANEEMQXXXXXXXXXXXXX 205
QQGANEEMQ
Sbjct: 146 IEEEEVEEEIEEEEEEIEEEEEEVREEVQEAGEEVDEEQQGANEEMQKSKEDADESSKSA 205
Query: 206 IPVQKQXXXXXXXXXXXXXXXXQHGDKLASQEHDIGENGDVDAQGVQQVADGETMEAKSE 265
IPVQKQ QHGDKLASQEHDIGENGDVDAQGVQQVADGETMEAKSE
Sbjct: 206 IPVQKQEEDEAEKEIIEAKDEEQHGDKLASQEHDIGENGDVDAQGVQQVADGETMEAKSE 265
Query: 266 EQNEAKVTSMEHDIEEGDEKASREQGNRALPSCSDHLRGVCAGMDVRGLLKLVCKNQSIC 325
EQNEAKVTSMEHDIEEGDEKASREQGNRALPSCSDHLRGVCAGMDVRGLLKLVCKNQSIC
Sbjct: 266 EQNEAKVTSMEHDIEEGDEKASREQGNRALPSCSDHLRGVCAGMDVRGLLKLVCKNQSIC 325
Query: 326 LWHEYPVVMRHAPDAAALVLQVVQGFLLSKKMKTTKVWGNCVGLIRCLPAVNASLSSDTM 385
LWHEYPVVMRHAPDAAALVLQVVQGFLLSKKMKTTKVWGNCVGLIRCLPAVNASLSSDTM
Sbjct: 326 LWHEYPVVMRHAPDAAALVLQVVQGFLLSKKMKTTKVWGNCVGLIRCLPAVNASLSSDTM 385
Query: 386 KQAKQLAKDWKEMIDSTGSSRDVLNLSSWGLLYFLISYNIVSEFSVDEIFCIFGTLSRKQ 445
KQAKQLAKDWKEMIDSTGSSRDVLNLSSWGLLYFLISYNIVSEFSVDEIFCIFGTLSRKQ
Sbjct: 386 KQAKQLAKDWKEMIDSTGSSRDVLNLSSWGLLYFLISYNIVSEFSVDEIFCIFGTLSRKQ 445
Query: 446 QKKNCIELCKGLGLVNRITDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVERA 505
QKKNCIELCKGLGLVNRITDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVERA
Sbjct: 446 QKKNCIELCKGLGLVNRITDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVERA 505
Query: 506 KQNALDIINMNSPRKSLSPLITKEVDSLMVAQNIVQQQITDFNVRSGMLAEMKKLLDQYA 565
KQNALDIINMNSPRKSLSPLITKEVDSLMVAQNIVQQQITDFNVRSGMLAEMKKLLDQYA
Sbjct: 506 KQNALDIINMNSPRKSLSPLITKEVDSLMVAQNIVQQQITDFNVRSGMLAEMKKLLDQYA 565
Query: 566 TKRSSGDACSASTSNSEXXXXXXXKHTN 593
TKRSSGDACSASTSNSE KHTN
Sbjct: 566 TKRSSGDACSASTSNSEQQQQQQQKHTN 593
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 713 CTTKLPTPSIPASISPMVPHIVQVDSVGHSPYAAMPISHTYAAQLGWPGNQSAAFAQNVG 772
CTTKLPTPSIPASISPMVPHIVQVDSVGHSPYAAMPISHTYAAQLGWPGNQSAAFAQNVG
Sbjct: 713 CTTKLPTPSIPASISPMVPHIVQVDSVGHSPYAAMPISHTYAAQLGWPGNQSAAFAQNVG 772
Query: 773 VSQFMGMFNPQQ 784
VSQFMGMFNPQQ
Sbjct: 773 VSQFMGMFNPQQ 784
>Os03g0588600 Frigida-like family protein
Length = 670
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 171/287 (59%), Gaps = 10/287 (3%)
Query: 302 LRGVCAGMDVRGLLKLVCKNQSICLWHEYPVVMRH-------APDAAALVLQVVQGFLLS 354
L CA MD L +++C + S H + RH A + AALV++ V+ L
Sbjct: 262 LAAACASMDSSSLARILCSSGSSSSSHA-TLAARHFRPALLAAAEPAALVVRAVRDLLAG 320
Query: 355 KKMKTTKVWGNCVGLIRCLPAVNASLSSDTMKQAKQLAKDWKEMIDSTGS-SRDVLNLSS 413
W +CV L+ C+P + + S TM+QA +LA+DWKEMI T S S ++ L+
Sbjct: 321 TAPIRDSAWESCVELLSCVPKLAVAPSPGTMEQANRLAEDWKEMIGRTESCSMNLGRLAV 380
Query: 414 WGLLYFLISYNIVSEFSVDEIFCIFGTLSRKQQKKNCIELCKGLGLVNRITDLIDYLIGN 473
WGLL FL+SYNIV EF +EI FGTL +K+ CI LCK LGL++++ D + +LI +
Sbjct: 381 WGLLNFLVSYNIVLEFDAEEIIHFFGTLP-DDKKQCCISLCKYLGLIDKMADSVGHLIEH 439
Query: 474 GQQLEALLLTQAFNLIDKYTPLSLLKGYVERAKQNALDIINMNSPRKSLSPLITKEVDSL 533
GQQL A+ L NL DKYTPLS+++ Y++ AK+ A +I++M S +SL ++K+V++L
Sbjct: 440 GQQLVAIRLACTLNLTDKYTPLSIMEDYIQNAKETAQEILSMESDSESLKLSMSKQVNAL 499
Query: 534 MVAQNIVQQQITDFNVRSGMLAEMKKLLDQYATKRSSGDACSASTSN 580
+++ +V + D + AE+ +LL +YA KR S + + TS+
Sbjct: 500 ILSWRVVGECNIDSVHCDRIKAEITQLLHKYANKRHSLEELPSDTSS 546
>Os09g0248300 Frigida-like family protein
Length = 542
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 26/243 (10%)
Query: 286 ASREQGNRALPSCSDHLRGVCAGMDVRGLLKLVCKNQS--ICLWHEYPVVMRHAPDAAAL 343
A + GN A+ S L +C M+V GL K + N+ + E PV +R A D L
Sbjct: 151 AYLQDGNTAVKPRS-QLVILCEEMNVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGL 209
Query: 344 VLQVVQGFLLSKKMKTT-KVWGNCVGLIR-CLPAVNA-----------------SLSSDT 384
VL ++ F + K GN +G+ R CL + + L++
Sbjct: 210 VLASLEDFYFGDNLILDGKKDGNLLGVRRTCLMLMESLAQLQTDATTGFISKGQMLTASI 269
Query: 385 MKQAKQLAKDWKEMIDSTGSSRDVLN-LSSWGLLYFLISYNIVSEFSVDEIFCIFGTLSR 443
++AK++A +WK +DS N L + L L ++ I SEF+ DE+ + ++SR
Sbjct: 270 KERAKKIALEWKSKLDSLDFDASNGNCLEAHAFLQLLATFAIFSEFAEDELCKLLPSVSR 329
Query: 444 KQQKKNCIELCKGLGLVNRITDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVE 503
++Q ELC+ LGL + +I LI NG+ ++A+ L AF L D++ P+ LLK Y++
Sbjct: 330 RRQTP---ELCRILGLSQNMPGVIGVLIENGRTIDAINLAYAFELTDQFEPVELLKAYLK 386
Query: 504 RAK 506
K
Sbjct: 387 EVK 389
>Os09g0248200 Frigida-like family protein
Length = 540
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 25/224 (11%)
Query: 305 VCAGMDVRGLLKLVCKNQS--ICLWHEYPVVMRHAPDAAALVLQVVQGFLLSKKMKTT-K 361
+C M+V GL K + N+ + E PV +R A D LVL ++ F + K
Sbjct: 173 LCEEMNVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLILDGK 232
Query: 362 VWGNCVGLIR-CLPAVNA-----------------SLSSDTMKQAKQLAKDWKEMIDSTG 403
GN +G+ R CL + + L++ ++AK++A +WK +DS
Sbjct: 233 KDGNLLGVRRTCLMLMESLAQLQTDATTGFISEGQVLTASIKERAKKIALEWKSKLDSLD 292
Query: 404 SSRDVLN-LSSWGLLYFLISYNIVSEFSVDEIFCIFGTLSRKQQKKNCIELCKGLGLVNR 462
N L + L L ++ I +EF+ DE+ + ++SR++Q ELC+ LGL
Sbjct: 293 FDASNGNCLEAHAFLQLLATFGIFAEFAQDELCKLLPSVSRRRQ---TPELCRILGLSQN 349
Query: 463 ITDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVERAK 506
+ +I L+ NG+ ++A+ L AF L +++ P+ LLK Y++ K
Sbjct: 350 MPGVIGVLVENGRTIDAINLAYAFELTNQFEPVELLKAYLQEVK 393
>Os07g0592300 Frigida-like family protein
Length = 608
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 28/227 (12%)
Query: 302 LRGVCAGMDVRGLLKLVCKN--QSICLWHEYPVVMRHAPDAAALVLQVVQGFLLSKKMKT 359
L+ +C MD GLLK + +N + L E +R A D A VL ++GF S
Sbjct: 178 LKQLCEQMDTAGLLKFLSENWKKLSSLRDELSAALRCATDPARFVLGSLEGFFPSDH--- 234
Query: 360 TKVWGN-----------CVGLIRCL--------PAVNASLSSDTMKQAKQLAKDWKEMID 400
T GN C+ L+ + P N SS+ + AK +A++WK +
Sbjct: 235 TSSPGNKQIILQGQRRSCIILMEAITPALATKEPGDNHPWSSEIRELAKAIAEEWKSKLA 294
Query: 401 STG-SSRDVLNLSSWGLLYFLISYNIVSEFSVDEIFCIFGTLSRKQQKKNCIELCKGLGL 459
+ D +L + L L ++N+ S DE+ + +SR++Q ELC+ L L
Sbjct: 295 EVDLDASDGYSLEAQAFLQLLTTFNVDSVLDEDELCKLVVAVSRRKQ---TAELCRSLCL 351
Query: 460 VNRITDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVERAK 506
RI D+I L+ +Q++A+ AF L + + P LLK YVE K
Sbjct: 352 NERIPDIIKELVNRHRQIDAVQFIHAFGLSESFPPAPLLKTYVEELK 398
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,143,334
Number of extensions: 558097
Number of successful extensions: 1865
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1857
Number of HSP's successfully gapped: 7
Length of query: 798
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 689
Effective length of database: 11,344,475
Effective search space: 7816343275
Effective search space used: 7816343275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)