Os07g0173200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Frigida-like family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0173200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Frigida-like family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.24 | 0.258 | 12.9 | 1.44 | 0.748 | 0.429 | -0.145 | -0.937 | 0.479 | 19.6 | 24.4 | 748 | -- | -- |
| 31.61 | 0.262 | 12.9 | 1.34 | 0.767 | 0.581 | -0.0248 | -- | 0.496 | 19.6 | 24.07 | 792 | -- | -- |
| 30.29 | 0.256 | 12.9 | 1.44 | 0.747 | 0.432 | -- | -0.904 | 0.48 | 19.7 | 24.4 | 780 | -- | -- |
| 31.33 | 0.261 | 12.9 | 1.29 | 0.749 | 0.576 | -- | -- | 0.467 | 19.6 | 23.92 | 812 | -- | -- |
| 57.11 | 0.352 | 12.9 | 1.57 | -- | 0.45 | -- | -1.36 | 0.493 | -- | 37.75 | 1380 | -- | -- |
| 35.42 | 0.279 | 13 | 1.14 | 0.705 | -- | 0.0755 | -- | 0.344 | 19.4 | -- | -- | -- | -- |
| 35.43 | 0.279 | 13 | 1.14 | 0.705 | -- | -- | -- | 0.344 | 19.4 | -- | -- | -- | -- |
| 58.69 | 0.357 | 12.9 | 1.27 | -- | 0.435 | -- | -- | 0.413 | -- | 45.69 | 1384 | -- | -- |
| 69.03 | 0.389 | 13 | -- | 0.702 | -0.208 | -- | -- | 0.19 | 19.7 | 23.92 | 812 | -- | -- |
| 61.95 | 0.368 | 13 | 1.13 | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
| 69.69 | 0.391 | 13 | -- | 0.695 | -- | -- | -- | 0.217 | 19.5 | -- | -- | -- | -- |
| 74.33 | 0.402 | 13 | -- | -- | -0.741 | -- | -- | -0.0139 | -- | 38.03 | 47520 | -- | -- |
| 95.58 | 0.456 | 13 | -- | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 2 | 27.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 5 | 28.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 7 | 28.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 8 | 28.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 24 | 28.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 29 | 28.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 9 |
| 32 | 28.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 11 |
| 39 | 28.87 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 42 | 28.89 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 49 | 28.93 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 109 | 29.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 133 | 29.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 171 | 29.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 232 | 29.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 235 | 29.61 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 239 | 29.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 249 | 29.64 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 263 | 29.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 364 | 29.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 381 | 29.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 4 |
| 394 | 29.85 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 413 | 29.87 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 423 | 29.88 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 424 | 29.88 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 700 | 30.16 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 708 | 30.16 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 716 | 30.16 | humidity | 80 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 740 | 30.19 | radiation | 1 | 4320 | > th | dose independent | sin | 14 | NA |
| 762 | 30.20 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 847 | 30.27 | radiation | 1 | 4320 | < th | dose independent | sin | 14 | NA |
| 848 | 30.27 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 853 | 30.27 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 893 | 30.30 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 942 | 30.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 952 | 30.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 957 | 30.34 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 960 | 30.34 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 963 | 30.34 | wind | 9 | 4320 | > th | dose dependent | rect. | 12 | 2 |
| 971 | 30.34 | humidity | 90 | 720 | > th | dose dependent | rect. | 6 | 20 |