BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0116100 Os09g0116100|Os09g0116100
(247 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0116100 Protein of unknown function DUF597 family protein 516 e-147
Os09g0118900 375 e-104
Os03g0225400 109 2e-24
Os03g0225450 90 1e-18
Os02g0183000 Protein of unknown function DUF597 family protein 88 6e-18
Os02g0172800 Similar to Zinc-binding protein 86 3e-17
Os06g0666100 Protein of unknown function DUF597 family protein 86 4e-17
Os04g0591100 Protein of unknown function DUF597 family protein 65 4e-11
Os02g0692700 Protein of unknown function DUF597 family protein 65 5e-11
>Os09g0116100 Protein of unknown function DUF597 family protein
Length = 247
Score = 516 bits (1329), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MTSFKVYLISKMTSFKGEEITVVEEPILFDNNQEEDNSSNPLNLLADTSELFRNMDDDES 60
MTSFKVYLISKMTSFKGEEITVVEEPILFDNNQEEDNSSNPLNLLADTSELFRNMDDDES
Sbjct: 1 MTSFKVYLISKMTSFKGEEITVVEEPILFDNNQEEDNSSNPLNLLADTSELFRNMDDDES 60
Query: 61 PLWLNVLLRTIFWRKCDVHEQLENAHRAEESIFCINCLKTICPHCTHDEPSHQLLKVRRY 120
PLWLNVLLRTIFWRKCDVHEQLENAHRAEESIFCINCLKTICPHCTHDEPSHQLLKVRRY
Sbjct: 61 PLWLNVLLRTIFWRKCDVHEQLENAHRAEESIFCINCLKTICPHCTHDEPSHQLLKVRRY 120
Query: 121 IFRSVVRVKDMQNFGIDMSYIQTFKCNGHKVVHLRPIKRSEHHRPKAGTPHCTSCHCWLH 180
IFRSVVRVKDMQNFGIDMSYIQTFKCNGHKVVHLRPIKRSEHHRPKAGTPHCTSCHCWLH
Sbjct: 121 IFRSVVRVKDMQNFGIDMSYIQTFKCNGHKVVHLRPIKRSEHHRPKAGTPHCTSCHCWLH 180
Query: 181 NAPSLTCSLSCKKKAGISSDDFSGPEASTRVSRSRNHASNVNQKHPTNTKLRKKPRKQAN 240
NAPSLTCSLSCKKKAGISSDDFSGPEASTRVSRSRNHASNVNQKHPTNTKLRKKPRKQAN
Sbjct: 181 NAPSLTCSLSCKKKAGISSDDFSGPEASTRVSRSRNHASNVNQKHPTNTKLRKKPRKQAN 240
Query: 241 PERAPFF 247
PERAPFF
Sbjct: 241 PERAPFF 247
>Os09g0118900
Length = 244
Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/219 (82%), Positives = 195/219 (89%), Gaps = 3/219 (1%)
Query: 16 KGEEITVV-EEPILFDNNQEEDNSSNPLNLLADTSELFRNMDDD-ESPLWLNVLLRTIFW 73
+ EEI++ EEP+L DNN +E+NS LNLLADTSE F+NMDDD ESPLWLNVLLRT FW
Sbjct: 21 RDEEISMAPEEPVLVDNNNQEENSLQQLNLLADTSEWFKNMDDDDESPLWLNVLLRTAFW 80
Query: 74 RKCDVHEQLENAHRAEESIFCINCLKTICPHCTHDEPSHQLLKVRRYIFRSVVRVKDMQN 133
RKCDVH+QLEN HRAEESIFC NCLKTICPHC HD+PSHQLLKVRRYIFRSVV VKDMQN
Sbjct: 81 RKCDVHDQLENTHRAEESIFCTNCLKTICPHCKHDQPSHQLLKVRRYIFRSVVHVKDMQN 140
Query: 134 FGIDMSYIQTFKCNGHKVVHLRPIKRSEHHRPKAGTPHCTSCHCWLHNAPSLTCSLSCKK 193
FGIDMSYIQTFKCNGHKVVHLRP+KRS+HHRPKAGTP CT+C CWLHNAPSLTCSLSCKK
Sbjct: 141 FGIDMSYIQTFKCNGHKVVHLRPMKRSKHHRPKAGTPRCTTCQCWLHNAPSLTCSLSCKK 200
Query: 194 KAGISSDDFSGPEASTRVSRSRNHASNVNQKHP-TNTKL 231
KAGIS +DFSG EASTRVSRSRN AS+ NQK P NTKL
Sbjct: 201 KAGISPNDFSGSEASTRVSRSRNQASDANQKRPIANTKL 239
>Os03g0225400
Length = 137
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 82/143 (57%), Gaps = 8/143 (5%)
Query: 1 MTSFKVYLISKMTSFKGEEITVVEEPILFDNNQEEDNSSNPLNLLADTSELFRNMDDDES 60
M F I KG+E EP + ++ SS +N L + +++E+
Sbjct: 1 MFPFGSKPIPSSNKLKGKETRA--EPEVSSVSKASGGSSEHINKLPPPVPV---QEEEEA 55
Query: 61 PLWLNVLLRTIFWRKCDVHEQLENAHRAEESIFCINCLKTICPHCTHDEPSHQLLKVRRY 120
P WL+VLLRT FW +C H +A RAE IFC+ C + +CP C+HDEP H+LLKVRRY
Sbjct: 56 PEWLDVLLRTKFWGQCKQHW---DASRAEVCIFCLRCRQVLCPRCSHDEPGHRLLKVRRY 112
Query: 121 IFRSVVRVKDMQNFGIDMSYIQT 143
++RSVV +D+Q +D+S +Q
Sbjct: 113 MYRSVVLARDLQGLNVDVSRVQV 135
>Os03g0225450
Length = 159
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 70/157 (44%), Gaps = 52/157 (33%)
Query: 143 TFKCNGHKVVHLRPIKRSEHHRPKAGTPHCTSCHCWLHNAPSLTCSLSCKKKAGISSDDF 202
T+ NG K VHLRP++RS +P TP C SC CWL +AP++ CSLSCK IS DDF
Sbjct: 3 TYIVNGQKGVHLRPMRRSPQFKPHVETPRCLSCFCWLRSAPNIFCSLSCKVGVDISQDDF 62
Query: 203 SGPEASTR----------------------VSRSRNH----------------------- 217
SGPEA R S RN
Sbjct: 63 SGPEAERRHKQTLGIVVESSPQQSIPQPFDASPVRNEDATMVEAECGQVQTNATESESSA 122
Query: 218 ASNVNQKHPTNTK-------LRKKPRKQANPERAPFF 247
+ ++ P TK LR++ RKQA P+RAPFF
Sbjct: 123 VGDADEVIPKVTKFNVDIHSLRRRVRKQAAPQRAPFF 159
>Os02g0183000 Protein of unknown function DUF597 family protein
Length = 232
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 61 PLWLNVLLRTIFWRKCDVHEQLENAHRAEESIFCINCLKTICPHCTHDEPSHQLLKVRRY 120
P WL L F+ C HE +A + E++I C++C +ICPHC H+LL+VRRY
Sbjct: 4 PAWLEALNTQKFFIACSFHE---HAKKNEKNICCLDCCTSICPHCVAAHRVHRLLQVRRY 60
Query: 121 IFRSVVRVKDMQNFGIDMSYIQTFKCNGHKVVHLRPIKRSEHHRPKAGTPHCTSCHCWLH 180
++ VVR++D++ ID S +Q++ N KVV L+ KR ++ + K CTSC L
Sbjct: 61 VYHDVVRLEDLEKL-IDCSSVQSYTINSSKVVFLK--KRPQNRQFKGSGNICTSCDRSLQ 117
Query: 181 NAPSLTCSLSCK 192
P CSL CK
Sbjct: 118 E-PYFHCSLDCK 128
>Os02g0172800 Similar to Zinc-binding protein
Length = 241
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 9/133 (6%)
Query: 61 PLWLNVLLRTIFWRKCDVHEQLENAHRAEESIFCINCLKTICPHCTHDEPSHQLLKVRRY 120
P W+ L+ F+ C HE + + E++IFC+ C +ICPHC H LL+VRRY
Sbjct: 5 PGWVGGLVEESFFVGCPAHESRK---KNEKNIFCLACCTSICPHCAPSHRHHPLLQVRRY 61
Query: 121 IFRSVVRVKDMQNFGIDMSYIQTFKCNGHKVVHLRPIKRSEHHRPKAGTPH-CTSCHCWL 179
++ VVR+ D++ I+ SY+Q + N KV+ L+P +S RP G+ + C +C L
Sbjct: 62 VYNDVVRLGDLEKL-IECSYVQPYTINSAKVIFLKPRPQS---RPFKGSGNVCLTCDRIL 117
Query: 180 HNAPSLTCSLSCK 192
P CSLSCK
Sbjct: 118 QE-PFHFCSLSCK 129
>Os06g0666100 Protein of unknown function DUF597 family protein
Length = 261
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 61 PLWLNVLLRTIFWRKCDVHEQLENAHRAEESIFCINCLKTICPHCTHDEPSHQLLKVRRY 120
P W+ L+ F+ C HE + + E++IFC+ C +ICPHC H LL+VRRY
Sbjct: 5 PGWVGGLVEESFFVGCPAHESRK---KNEKNIFCLGCCASICPHCAPSHRHHPLLQVRRY 61
Query: 121 IFRSVVRVKDMQNFGIDMSYIQTFKCNGHKVVHLRPIKRSEHHRPKAGTPH-CTSCHCWL 179
++ VVR+ D+ ID S++Q + N KV+ L+P +S RP G+ + C +C L
Sbjct: 62 VYNDVVRLDDLDKL-IDCSFVQPYTINSAKVIFLKPRPQS---RPFKGSGNICLTCDRIL 117
Query: 180 HNAPSLTCSLSCK 192
P C LSCK
Sbjct: 118 QE-PFHFCCLSCK 129
>Os04g0591100 Protein of unknown function DUF597 family protein
Length = 249
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 10/145 (6%)
Query: 61 PLWLNVLLRTIFWRKCDVHEQLENAHRAEESIFCINCL-KTICPHCTHDEPSHQLLKVRR 119
P WL LL T F+ +C +H ++H++E +++C++C+ +C C H +++RR
Sbjct: 34 PPWLKPLLATSFFGQCKLHA---DSHKSECNMYCLDCMNGALCSQCLSYHRDHHAIQIRR 90
Query: 120 YIFRSVVRVKDMQNFGIDMSYIQTFKCNGHKVVHLRPIKRSEHHRPKAGTPHCTSCHCWL 179
+ V+RV ++Q +D++ +QT+ N +VV L +R + K T C C L
Sbjct: 91 SSYHDVIRVSEIQKV-LDITGVQTYIINSARVVFLN--ERPQPRPGKGVTNTCEVCERSL 147
Query: 180 HNAPSLTCSLSCKKKAGISSDDFSG 204
+ CSL CK +S D+ G
Sbjct: 148 LDTFRF-CSLGCKIVG--TSGDYRG 169
>Os02g0692700 Protein of unknown function DUF597 family protein
Length = 287
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 55 MDDDESPLWLNVLLRTIFWRKCDVHEQLENAHRAEESIFCINCL-KTICPHCTHDEPSHQ 113
+++ P WL LL T F+ +C +H +AH++E +++C++C+ +C C H
Sbjct: 57 VENQRWPPWLKPLLSTSFFVQCRIHA---DAHKSECNMYCLDCMNGALCSLCLSHHRDHH 113
Query: 114 LLKVRRYIFRSVVRVKDMQNFGIDMSYIQTFKCNGHKVVHLRPIKRSEHHRPKAGTPHCT 173
+++RR + V+RV ++Q +D++ +QT+ N +VV L +R + K T C
Sbjct: 114 AIQIRRSSYHDVIRVSEIQKV-LDITGVQTYIINSARVVFLN--ERPQPRPGKGVTNTCE 170
Query: 174 SCHCWLHNAPSLTCSLSCK 192
C L ++ CSL CK
Sbjct: 171 VCERSLLDSFRF-CSLGCK 188
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,786,705
Number of extensions: 362350
Number of successful extensions: 1031
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1029
Number of HSP's successfully gapped: 12
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)