Os02g0172800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Zinc-binding protein.
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Os02g0172800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Zinc-binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 321.5 | 0.842 | 3.84 | -1.55 | 0.785 | 0.438 | -0.443 | 14.1 | -0.66 | 23.3 | 995 | 686 | -- | -- |
| 323.14 | 0.837 | 3.81 | -1.53 | 0.717 | 2.64 | -0.377 | -- | -0.547 | 23.2 | 994.7 | 696 | -- | -- |
| 321.41 | 0.835 | 3.85 | -1.56 | 0.792 | 0.506 | -- | 13.8 | -0.672 | 23.5 | 994.7 | 701 | -- | -- |
| 322.19 | 0.836 | 3.85 | -1.64 | 0.74 | 2.96 | -- | -- | -0.623 | 23.1 | 994.7 | 695 | -- | -- |
| 359.77 | 0.883 | 3.84 | -1.54 | -- | 0.807 | -- | 13.7 | -0.686 | -- | 994.7 | 701 | -- | -- |
| 359.55 | 0.889 | 3.88 | -1.63 | 0.87 | -- | -0.243 | -- | -0.695 | 23.2 | -- | -- | -- | -- |
| 359.78 | 0.888 | 3.88 | -1.62 | 0.871 | -- | -- | -- | -0.694 | 23.3 | -- | -- | -- | -- |
| 359.67 | 0.883 | 3.85 | -1.69 | -- | 3.09 | -- | -- | -0.65 | -- | 994.6 | 704 | -- | -- |
| 397.49 | 0.929 | 3.81 | -- | 0.788 | 2.62 | -- | -- | -0.476 | 23.2 | 994.6 | 693 | -- | -- |
| 407.24 | 0.943 | 3.85 | -1.6 | -- | -- | -- | -- | -0.686 | -- | -- | -- | -- | -- |
| 429.3 | 0.969 | 3.84 | -- | 0.855 | -- | -- | -- | -0.514 | 23.2 | -- | -- | -- | -- |
| 434.57 | 0.971 | 3.81 | -- | -- | 2.85 | -- | -- | -0.468 | -- | 994.7 | 695 | -- | -- |
| 474.93 | 1.02 | 3.81 | -- | -- | -- | -- | -- | -0.508 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 308.59 | atmosphere | 995 | 720 | > th | dose independent | rect. | 3 | 16 |
| 2 | 313.72 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 4 | 314.61 | atmosphere | 995 | 720 | > th | dose independent | rect. | 14 | 16 |
| 5 | 315.16 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 6 | 315.50 | atmosphere | 995 | 720 | > th | dose independent | rect. | 7 | 16 |
| 7 | 315.53 | atmosphere | 995 | 720 | > th | dose independent | rect. | 11 | 8 |
| 13 | 315.94 | atmosphere | 995 | 720 | > th | dose independent | rect. | 11 | 16 |
| 14 | 316.18 | atmosphere | 995 | 720 | > th | dose independent | sin | 17 | NA |
| 15 | 316.20 | atmosphere | 995 | 720 | > th | dose independent | rect. | 15 | 8 |
| 20 | 316.55 | atmosphere | 995 | 720 | > th | dose independent | sin | 21 | NA |
| 23 | 316.58 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 17 | 8 |
| 38 | 317.24 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 18 | 8 |
| 47 | 317.79 | atmosphere | 995 | 720 | > th | dose independent | rect. | 16 | 23 |
| 49 | 317.86 | atmosphere | 995 | 720 | > th | dose independent | rect. | 22 | 23 |
| 51 | 317.94 | atmosphere | 995 | 720 | > th | dose independent | sin | 8 | NA |
| 52 | 318.04 | atmosphere | 995 | 720 | > th | dose independent | rect. | 3 | 23 |
| 53 | 318.09 | atmosphere | 995 | 720 | > th | dose independent | rect. | 13 | 8 |
| 54 | 318.11 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 62 | 318.37 | atmosphere | 995 | 720 | > th | dose independent | rect. | 9 | 16 |
| 72 | 318.70 | atmosphere | 995 | 720 | > th | dose independent | rect. | 11 | 23 |
| 82 | 319.43 | atmosphere | 995 | 720 | > th | dose independent | rect. | 18 | 23 |
| 86 | 319.63 | atmosphere | 995 | 720 | > th | dose independent | rect. | 24 | 23 |
| 91 | 319.86 | atmosphere | 995 | 720 | > th | dose independent | rect. | 20 | 23 |
| 98 | 320.21 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 152 | 321.64 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 23 | 19 |
| 155 | 321.67 | atmosphere | 1000 | 30 | < th | dose dependent | sin | 13 | NA |
| 166 | 321.98 | atmosphere | 995 | 720 | > th | dose independent | rect. | 7 | 23 |
| 173 | 322.10 | atmosphere | 995 | 720 | < th | dose independent | sin | 8 | NA |
| 174 | 322.10 | atmosphere | 995 | 720 | < th | dose independent | rect. | 17 | 22 |
| 175 | 322.11 | atmosphere | 995 | 720 | < th | dose dependent | sin | 8 | NA |
| 179 | 322.13 | atmosphere | 995 | 720 | < th | dose independent | sin | 10 | NA |
| 191 | 322.25 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 17 | 2 |
| 195 | 322.28 | atmosphere | 995 | 720 | > th | dose independent | rect. | 3 | 20 |
| 217 | 322.29 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 223 | 322.37 | atmosphere | 995 | 720 | < th | dose independent | rect. | 15 | 4 |
| 245 | 322.40 | atmosphere | 995 | 720 | < th | dose dependent | sin | 10 | NA |
| 252 | 322.44 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 262 | 322.52 | atmosphere | 995 | 720 | < th | dose independent | no | NA | NA |
| 530 | 322.61 | atmosphere | 995 | 720 | < th | dose dependent | no | NA | NA |
| 721 | 322.63 | atmosphere | 995 | 720 | > th | dose independent | no | NA | NA |
| 803 | 322.89 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 873 | 323.23 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 6 |
| 889 | 323.31 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 23 | 21 |
| 903 | 323.47 | atmosphere | 995 | 720 | > th | dose independent | rect. | 7 | 8 |
| 963 | 324.06 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 13 | 5 |
| 973 | 324.17 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 21 | 1 |
| 999 | 324.52 | atmosphere | 1000 | 30 | > th | dose independent | sin | 14 | NA |