BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0172800 Os02g0172800|AK103838
(241 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31040.1 | chr1:11069793-11072182 REVERSE LENGTH=244 219 1e-57
AT2G12646.1 | chr2:5167179-5169022 REVERSE LENGTH=257 200 5e-52
AT3G60670.1 | chr3:22424695-22426074 REVERSE LENGTH=246 181 3e-46
AT1G32700.1 | chr1:11827588-11829444 FORWARD LENGTH=214 120 9e-28
AT1G43000.1 | chr1:16140816-16141655 FORWARD LENGTH=217 117 4e-27
AT1G21000.1 | chr1:7337919-7339088 FORWARD LENGTH=247 117 4e-27
AT1G76590.1 | chr1:28740875-28741894 FORWARD LENGTH=246 115 2e-26
AT4G17900.1 | chr4:9946046-9947697 FORWARD LENGTH=228 114 3e-26
AT2G27930.1 | chr2:11892369-11893488 FORWARD LENGTH=190 111 4e-25
AT2G01818.1 | chr2:353552-355370 REVERSE LENGTH=223 108 3e-24
AT5G46710.1 | chr5:18952839-18954484 REVERSE LENGTH=227 102 2e-22
AT2G17785.1 | chr2:7728186-7728927 REVERSE LENGTH=193 49 2e-06
>AT1G31040.1 | chr1:11069793-11072182 REVERSE LENGTH=244
Length = 243
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/242 (50%), Positives = 145/242 (59%), Gaps = 16/242 (6%)
Query: 2 GMRPGWVGGLVEESFFVGCPAHESRKKNEKNIFCLACCTSICPHCAPSHRHHPLLQVRRY 61
+P W+ GL+ E+FF C HE+R+K+EKN+FCL CC S+CPHC PSHR HPLLQVRRY
Sbjct: 16 ATKPAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCLSVCPHCLPSHRSHPLLQVRRY 75
Query: 62 VYNDVVRLGDLEKLIECSYVQPYTINSAKVIFLKPRPQSRPFKGSGNVCLTCDRILQEPF 121
VY+DVVRL DLEKLI+CSYVQPYTIN AKVIFL R QSR K S NVC TCDRILQEPF
Sbjct: 76 VYHDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSRA-KVSSNVCFTCDRILQEPF 134
Query: 122 HFCSLSCKVDHVMVHGGGDLSNIILLHPHHHPNTATASAFPRFEDLRVGXXXXXXXITAV 181
HFCSLSCKVD+ + + G DLS+I+ S F FE LR+ I+ +
Sbjct: 135 HFCSLSCKVDY-LSYQGDDLSSILY--------RIDESDFT-FEGLRMDGHDQLGEISTM 184
Query: 182 TPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFPQIL--GLGSRRKGAPHRSP 239
+ P ++ LG+RRKGAPHR+P
Sbjct: 185 ED---GEDILVISDESEQGNNSHKKEKKKSKKKKPESNYLPGMVLSSLGNRRKGAPHRAP 241
Query: 240 LS 241
S
Sbjct: 242 FS 243
>AT2G12646.1 | chr2:5167179-5169022 REVERSE LENGTH=257
Length = 256
Score = 200 bits (509), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 93/135 (68%), Positives = 109/135 (80%), Gaps = 1/135 (0%)
Query: 1 MGM-RPGWVGGLVEESFFVGCPAHESRKKNEKNIFCLACCTSICPHCAPSHRHHPLLQVR 59
MG+ +P W+ L E FFVGCP HE+ KKNE+N+ CL CCTS+CPHC PSHR H LLQVR
Sbjct: 1 MGIQKPAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCCTSLCPHCVPSHRFHRLLQVR 60
Query: 60 RYVYNDVVRLGDLEKLIECSYVQPYTINSAKVIFLKPRPQSRPFKGSGNVCLTCDRILQE 119
RYVY+DVVRL DL+KLI+CS VQ YTINSAKV+F+K RPQ+R FKG+GN C +CDR LQE
Sbjct: 61 RYVYHDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQE 120
Query: 120 PFHFCSLSCKVDHVM 134
P+ CSL CKVD VM
Sbjct: 121 PYIHCSLGCKVDFVM 135
>AT3G60670.1 | chr3:22424695-22426074 REVERSE LENGTH=246
Length = 245
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 78/138 (56%), Positives = 100/138 (72%)
Query: 2 GMRPGWVGGLVEESFFVGCPAHESRKKNEKNIFCLACCTSICPHCAPSHRHHPLLQVRRY 61
G P W+ L+++ FF C HE KKNEKNI C+ CC +ICPHC SH H LLQ+RRY
Sbjct: 4 GEFPAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCCLTICPHCLSSHTSHRLLQIRRY 63
Query: 62 VYNDVVRLGDLEKLIECSYVQPYTINSAKVIFLKPRPQSRPFKGSGNVCLTCDRILQEPF 121
VY DV+R+ D KL++CS +QPYT NS+KV+F+ RPQSR F+GSGN+C+TCDR LQ P+
Sbjct: 64 VYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRSLQSPY 123
Query: 122 HFCSLSCKVDHVMVHGGG 139
FC LSCK+ V++ G
Sbjct: 124 LFCCLSCKISDVIMRQRG 141
>AT1G32700.1 | chr1:11827588-11829444 FORWARD LENGTH=214
Length = 213
Score = 120 bits (300), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 82/140 (58%), Gaps = 1/140 (0%)
Query: 5 PGWVGGLVEESFFVGCPAHESRKKNEKNIFCLACCTS-ICPHCAPSHRHHPLLQVRRYVY 63
P W+ L+ E FFV C H K+E N++CL C +C C H+ H +Q+RR Y
Sbjct: 12 PHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSFHKDHHAIQIRRSSY 71
Query: 64 NDVVRLGDLEKLIECSYVQPYTINSAKVIFLKPRPQSRPFKGSGNVCLTCDRILQEPFHF 123
+DV+R+ +++K ++ + VQ Y INSAKV+FL RPQ RP KG N C C R L + F F
Sbjct: 72 HDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEVCYRSLVDSFRF 131
Query: 124 CSLSCKVDHVMVHGGGDLSN 143
CSL CK+ + + +N
Sbjct: 132 CSLGCKISGISKKKRKEWTN 151
>AT1G43000.1 | chr1:16140816-16141655 FORWARD LENGTH=217
Length = 216
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 84/147 (57%), Gaps = 4/147 (2%)
Query: 3 MRPGWVGGLVEESFFVGCPAHESRKKNEKNIFCLACC-TSICPHCAPSHRHHPLLQVRRY 61
M P W+ ++ +FV C H K+E N+FCL C + C C HR H ++Q+RR
Sbjct: 7 MTPPWLTPMLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLAHHRTHRVIQIRRS 66
Query: 62 VYNDVVRLGDLEKLIECSYVQPYTINSAKVIFLKPRPQSRPFKGSGNVCLTCDRILQEPF 121
Y++VVR+ +++K I+ S +Q Y INSAK+ FL RPQ R K C C R L + F
Sbjct: 67 SYHNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGKSLNKTCQICSRNLLDSF 126
Query: 122 HFCSLSCKVDHVMVHGGGDLSNIILLH 148
FCSL+CK++ V G+ N+ L H
Sbjct: 127 LFCSLACKLEGV---KNGEDPNLTLFH 150
>AT1G21000.1 | chr1:7337919-7339088 FORWARD LENGTH=247
Length = 246
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 5 PGWVGGLVEESFFVGCPAHESRKKNEKNIFCLACC-TSICPHCAPSHRHHPLLQVRRYVY 63
P W+ ++ S+FV C H KNE N+FCL C + C +C H+ H ++Q+RR Y
Sbjct: 16 PPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQIRRSSY 75
Query: 64 NDVVRLGDLEKLIECSYVQPYTINSAKVIFLKPRPQSRPFKGSGNVCLTCDRILQEPFHF 123
++VVR+ +++K I+ + VQ Y INSAK++FL RPQ R KG N C C R L + F F
Sbjct: 76 HNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRF 135
Query: 124 CSLSCKVDHVMVHGGGDLSNIILLHPHH 151
CSL CK+ + GDLS L H
Sbjct: 136 CSLGCKLGGMRR---GDLSLTFSLKGKH 160
>AT1G76590.1 | chr1:28740875-28741894 FORWARD LENGTH=246
Length = 245
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
Query: 5 PGWVGGLVEESFFVGCPAHESRKKNEKNIFCLACCT-SICPHCAPSHRHHPLLQVRRYVY 63
P W+ ++ ++F+ C H + K+E N+FCL C + + C +C +HR+H +LQ+RR Y
Sbjct: 18 PPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLNHRNHRVLQIRRSSY 77
Query: 64 NDVVRLGDLEKLIECSYVQPYTINSAKVIFLKPRPQSRPFKGSGNVCLTCDRILQEPFHF 123
++VVR+ +++K I+ S VQ Y INSA+++FL RPQ R KG N C C R L + F F
Sbjct: 78 HNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRF 137
Query: 124 CSLSCKV 130
CSL CK+
Sbjct: 138 CSLGCKL 144
>AT4G17900.1 | chr4:9946046-9947697 FORWARD LENGTH=228
Length = 227
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 79/128 (61%), Gaps = 2/128 (1%)
Query: 5 PGWVGGLVEESFFVGCPAHESRKKNEKNIFCLACCTS-ICPHCAPSHRHHPLLQVRRYVY 63
P W+ L++E FFV C H K+E N++CL C +C C H+ H +Q+RR Y
Sbjct: 34 PPWLKPLLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLAHHKDHRTIQIRRSSY 93
Query: 64 NDVVRLGDLEKLIECSYVQPYTINSAKVIFLKPRPQSRPFKGSGNVCLTCDR-ILQEPFH 122
+DV+R+ +++K ++ +Q Y INSAKV+FL RPQ RP KG N C C R ++ + F
Sbjct: 94 HDVIRVNEIQKYLDIGGIQTYVINSAKVVFLNERPQPRPGKGVTNTCKVCYRSLVDDSFR 153
Query: 123 FCSLSCKV 130
FCSL CK+
Sbjct: 154 FCSLGCKI 161
>AT2G27930.1 | chr2:11892369-11893488 FORWARD LENGTH=190
Length = 189
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 81/138 (58%), Gaps = 11/138 (7%)
Query: 5 PGWVGGLVEESFFVGCPAHESRKKNEKNIFCLAC-CTSICPHCAPS-HRHHPLLQVRRYV 62
P W+ GL+ +FF CP H +NE N+FCL+C + C +C S H HP+LQ+RR
Sbjct: 4 PKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSS 63
Query: 63 YNDVVRLGDLEKLIECSYVQPYTINSAKVIFLKPRPQ---------SRPFKGSGNVCLTC 113
Y+DVVR+ ++E ++ VQ Y INSA+V+FL RPQ S K C TC
Sbjct: 64 YHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETC 123
Query: 114 DRILQEPFHFCSLSCKVD 131
R L +PF FCSL CKV+
Sbjct: 124 CRTLLDPFRFCSLGCKVE 141
>AT2G01818.1 | chr2:353552-355370 REVERSE LENGTH=223
Length = 222
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 78/134 (58%), Gaps = 10/134 (7%)
Query: 7 WVGGLVEESFFVGCPAHESRKKNEKNIFCLACCTSICPHC----APSHRHHPLLQVRRYV 62
W+ L+ FF C H+ +KNEKN+FC+ C IC HC SH H LQ+ +YV
Sbjct: 13 WIETLLNSEFFGICMNHKYLRKNEKNVFCIDCNVEICRHCCNTVTDSHFLHRRLQICKYV 72
Query: 63 YNDVVRLGDLEKLIECSYVQPYTINSAKVIFLKPRPQSRPFKGS-----GNVCLTCDRIL 117
Y DV+RL +++ +CS +Q Y IN K I L RPQ++ + S G C+TC R +
Sbjct: 73 YQDVIRLLEIQNYFDCSEIQTYKINGEKAIHLNSRPQAKDARPSTKAKNGASCVTCKRYI 132
Query: 118 QE-PFHFCSLSCKV 130
Q+ P FCS+SCK+
Sbjct: 133 QDHPNLFCSISCKI 146
>AT5G46710.1 | chr5:18952839-18954484 REVERSE LENGTH=227
Length = 226
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 5 PGWVGGLVEESFFVGCPAHESRKKNEKNIFCLACCT-SICPHCAPSHRHHPLLQVRRYVY 63
P W+ L+ + FF C H + E ++CL C S C C H +H +Q+R Y
Sbjct: 28 PIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLSEHENHRTIQIRISSY 87
Query: 64 NDVVRLGDLEKLIECSYVQPYTINSAKVIFLKPRPQSRPFKGSGNVCLTCDRILQEP-FH 122
++V ++ +++K ++ S +Q Y INS+KV+FL RPQS+P KG N C+ C R L E F
Sbjct: 88 HNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKGFTNACMVCYRGLAENCFR 147
Query: 123 FCSLSCKV 130
FCS+ CKV
Sbjct: 148 FCSIGCKV 155
>AT2G17785.1 | chr2:7728186-7728927 REVERSE LENGTH=193
Length = 192
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 4 RPGWVGGLVEESFFVGCPAHESRKKNEKNIFCLACCTSICPHCAPSHRHHPLLQVRRYVY 63
+P W L EE H + KNIF C +CP + P +QV +
Sbjct: 3 KPRWFQVLTEEDLDGNYQKHTCGFR--KNIFRFESCDVVCPEGIDPNHIQPHVQVCTMLD 60
Query: 64 NDVVRLGDLEKLIECSYVQPYTINSAKVIFLKPRPQSRPFKGSGNVCLTCDRILQE-PFH 122
+ L + L +CS +Q + K + RP++ C + +Q
Sbjct: 61 LNAFELNQISDLFDCSQIQNHGYVGGKQFIM-----LRPWRDCVRNTEGCTKHVQGINSK 115
Query: 123 FCSLSCKVDHVMVHGGGDLSNIILL 147
FC+ +CK++HV+ H GDLS+I L
Sbjct: 116 FCTFTCKIEHVLEH-EGDLSSITRL 139
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.141 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,794,471
Number of extensions: 184449
Number of successful extensions: 599
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 12
Length of query: 241
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 145
Effective length of database: 8,474,633
Effective search space: 1228821785
Effective search space used: 1228821785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)