Os04g0591100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF597 family protein.
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Os04g0591100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF597 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.75 | 0.281 | 13.4 | 0.505 | 0.296 | -0.748 | -0.52 | 0.415 | 0.405 | 11.5 | 24.43 | 702 | -- | -- |
| 35.81 | 0.279 | 13.4 | 0.439 | 0.301 | -0.705 | -0.56 | -- | 0.396 | 11.2 | 24.34 | 707 | -- | -- |
| 36.76 | 0.282 | 13.4 | 0.55 | 0.315 | -0.776 | -- | 0.809 | 0.433 | 11.7 | 24.01 | 647 | -- | -- |
| 36.5 | 0.281 | 13.4 | 0.405 | 0.438 | -0.746 | -- | -- | 0.408 | 12.3 | 23.66 | 407 | -- | -- |
| 40.97 | 0.298 | 13.4 | 0.738 | -- | -0.978 | -- | 1.51 | 0.478 | -- | 24.3 | 794 | -- | -- |
| 46.01 | 0.318 | 13.4 | 0.271 | 0.516 | -- | -0.371 | -- | 0.313 | 9.72 | -- | -- | -- | -- |
| 46.52 | 0.319 | 13.4 | 0.257 | 0.519 | -- | -- | -- | 0.312 | 9.62 | -- | -- | -- | -- |
| 41.84 | 0.301 | 13.4 | 0.447 | -- | -0.852 | -- | -- | 0.401 | -- | 24.3 | 786 | -- | -- |
| 40.56 | 0.297 | 13.4 | -- | 0.431 | -0.645 | -- | -- | 0.349 | 11.9 | 23.9 | 407 | -- | -- |
| 62.45 | 0.369 | 13.4 | 0.253 | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
| 48.25 | 0.325 | 13.4 | -- | 0.518 | -- | -- | -- | 0.283 | 9.58 | -- | -- | -- | -- |
| 46.89 | 0.319 | 13.4 | -- | -- | -0.762 | -- | -- | 0.341 | -- | 24.4 | 755 | -- | -- |
| 64.13 | 0.374 | 13.4 | -- | -- | -- | -- | -- | 0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 16 |
| 2 | 33.87 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 17 |
| 10 | 34.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 22 |
| 22 | 34.48 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 18 |
| 62 | 35.06 | temperature | 20 | 30 | > th | dose dependent | sin | 18 | NA |
| 95 | 35.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 98 | 35.33 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 18 |
| 100 | 35.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 116 | 35.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 10 |
| 142 | 35.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 150 | 35.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 168 | 35.65 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 188 | 35.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 20 |
| 197 | 35.75 | temperature | 30 | 90 | < th | dose dependent | sin | 19 | NA |
| 213 | 35.82 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 16 |
| 245 | 35.88 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 254 | 35.89 | radiation | 1 | 90 | > th | dose independent | sin | 18 | NA |
| 255 | 35.89 | radiation | 1 | 270 | > th | dose independent | sin | 22 | NA |
| 256 | 35.89 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 20 |
| 266 | 35.89 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 316 | 35.98 | radiation | 1 | 270 | < th | dose independent | sin | 22 | NA |
| 326 | 36.00 | radiation | 1 | 270 | < th | dose dependent | sin | 22 | NA |
| 332 | 36.01 | temperature | 25 | 720 | > th | dose dependent | sin | 20 | NA |
| 358 | 36.06 | radiation | 1 | 30 | < th | dose dependent | sin | 17 | NA |
| 367 | 36.07 | radiation | 1 | 90 | < th | dose independent | sin | 18 | NA |
| 379 | 36.08 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 392 | 36.10 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 581 | 36.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 12 |
| 606 | 36.42 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 5 |
| 623 | 36.44 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 5 |
| 645 | 36.47 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 689 | 36.54 | radiation | 1 | 30 | < th | dose dependent | rect. | 7 | 17 |
| 721 | 36.59 | radiation | 1 | 30 | < th | dose dependent | rect. | 11 | 13 |
| 740 | 36.62 | radiation | 1 | 30 | < th | dose dependent | rect. | 13 | 11 |
| 774 | 36.66 | humidity | 50 | 270 | > th | dose dependent | rect. | 15 | 8 |
| 786 | 36.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 11 |
| 853 | 36.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 854 | 36.77 | radiation | 1 | 30 | < th | dose dependent | rect. | 15 | 9 |
| 860 | 36.79 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 2 |
| 861 | 36.79 | radiation | 1 | 30 | < th | dose independent | rect. | 11 | 13 |
| 865 | 36.79 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 874 | 36.79 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 876 | 36.80 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 16 | 7 |
| 889 | 36.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 7 |
| 901 | 36.82 | radiation | 1 | 30 | < th | dose independent | rect. | 13 | 11 |
| 906 | 36.82 | humidity | 50 | 270 | > th | dose dependent | rect. | 5 | 16 |
| 908 | 36.82 | humidity | 50 | 270 | > th | dose dependent | rect. | 4 | 19 |
| 936 | 36.85 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 9 |
| 997 | 36.94 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 6 |