Os02g0692700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF597 family protein.
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Os02g0692700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF597 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.32 | 0.343 | 13.8 | 1.23 | 0.998 | 0.276 | 1.69 | 2.21 | 0.459 | 17.9 | 9.998 | 379 | -- | -- |
| 57.51 | 0.353 | 13.8 | 1.28 | 0.84 | 0.356 | 0.921 | -- | 0.526 | 19 | 32.02 | 1387 | -- | -- |
| 58.74 | 0.357 | 13.8 | 1.23 | 0.999 | 0.28 | -- | 1.61 | 0.457 | 17.5 | 9.983 | 366 | -- | -- |
| 59.71 | 0.36 | 13.7 | 1.3 | 0.82 | 0.437 | -- | -- | 0.577 | 18.5 | 32.01 | 1483 | -- | -- |
| 95.21 | 0.454 | 13.7 | 1.1 | -- | 0.163 | -- | 1.39 | 0.421 | -- | 45.1 | 3110 | -- | -- |
| 65.02 | 0.378 | 13.8 | 1.22 | 0.792 | -- | 1.21 | -- | 0.432 | 19.1 | -- | -- | -- | -- |
| 67.57 | 0.385 | 13.8 | 1.2 | 0.817 | -- | -- | -- | 0.438 | 18.5 | -- | -- | -- | -- |
| 93.97 | 0.451 | 13.7 | 1.31 | -- | 0.459 | -- | -- | 0.565 | -- | 31.73 | 1479 | -- | -- |
| 91.1 | 0.445 | 13.8 | -- | 0.797 | 0.447 | -- | -- | 0.397 | 18.2 | 38.99 | 24509 | -- | -- |
| 102.24 | 0.472 | 13.8 | 1.18 | -- | -- | -- | -- | 0.421 | -- | -- | -- | -- | -- |
| 105.7 | 0.481 | 13.8 | -- | 0.801 | -- | -- | -- | 0.304 | 18.5 | -- | -- | -- | -- |
| 121.89 | 0.514 | 13.8 | -- | -- | 0.614 | -- | -- | 0.317 | -- | 40 | 28706 | -- | -- |
| 139.1 | 0.55 | 13.8 | -- | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.85 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 6 | 48.45 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 14 |
| 11 | 48.88 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 15 | 49.06 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 19 | 49.18 | temperature | 30.0 | 720 | < th | dose independent | sin | 11 | NA |
| 21 | 49.22 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 22 | 49.24 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 8 |
| 24 | 49.28 | temperature | 25.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 25 | 49.28 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 10 |
| 34 | 49.44 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 37 | 49.54 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 17 |
| 60 | 49.78 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 69 | 49.89 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 10 |
| 76 | 49.96 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 12 |
| 77 | 49.96 | humidity | 70.0 | 720 | > th | dose independent | rect. | 11 | 13 |
| 78 | 49.97 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 85 | 50.01 | temperature | 25.0 | 720 | < th | dose independent | rect. | 5 | 5 |
| 97 | 50.09 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 23 | 15 |
| 98 | 50.09 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 23 | 15 |
| 99 | 50.09 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 102 | 50.11 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 6 | 17 |
| 107 | 50.15 | humidity | 70.0 | 720 | > th | dose independent | sin | 16 | NA |
| 109 | 50.15 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 16 |
| 133 | 50.26 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 11 | 16 |
| 141 | 50.30 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 8 |
| 142 | 50.30 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 19 |
| 153 | 50.35 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 13 | 4 |
| 157 | 50.35 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 13 | 11 |
| 158 | 50.35 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 161 | 50.36 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 176 | 50.43 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 215 | 50.58 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 5 | 12 |
| 216 | 50.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 217 | 50.59 | temperature | 30.0 | 720 | < th | dose independent | rect. | 13 | 6 |
| 224 | 50.61 | temperature | 25.0 | 720 | < th | dose independent | rect. | 7 | 1 |
| 253 | 50.69 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 2 | 9 |
| 256 | 50.69 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 276 | 50.75 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 281 | 50.77 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 304 | 50.80 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 12 |
| 315 | 50.82 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 327 | 50.85 | radiation | 40.0 | 720 | < th | dose independent | rect. | 6 | 18 |
| 332 | 50.85 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 20 |
| 342 | 50.88 | atmosphere | 995.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 377 | 50.96 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 15 | 1 |
| 398 | 50.99 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 414 | 51.02 | radiation | 10.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 459 | 51.13 | temperature | 30.0 | 720 | < th | dose independent | sin | 21 | NA |
| 460 | 51.13 | radiation | 40.0 | 720 | < th | dose independent | rect. | 11 | 6 |
| 545 | 51.29 | radiation | 10.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 581 | 51.35 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 11 | 13 |
| 584 | 51.35 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 19 |
| 598 | 51.37 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 15 | 12 |
| 610 | 51.39 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 2 |
| 617 | 51.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 14 |
| 619 | 51.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 644 | 51.43 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 12 |
| 662 | 51.47 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 24 | 17 |
| 699 | 51.52 | radiation | 20.0 | 270 | < th | dose independent | rect. | 19 | 14 |
| 707 | 51.53 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 22 | 19 |
| 712 | 51.54 | radiation | 20.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 744 | 51.58 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 19 | 14 |
| 797 | 51.68 | atmosphere | 1000.0 | 720 | > th | dose independent | sin | 1 | NA |
| 821 | 51.70 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 822 | 51.70 | radiation | 10.0 | 90 | < th | dose independent | rect. | 13 | 14 |
| 831 | 51.71 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 9 | 8 |
| 856 | 51.75 | radiation | 40.0 | 720 | < th | dose independent | rect. | 13 | 4 |
| 863 | 51.75 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 870 | 51.76 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 13 | 19 |
| 880 | 51.77 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 5 | 11 |
| 897 | 51.79 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 914 | 51.80 | temperature | 10.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 930 | 51.83 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 4 |
| 939 | 51.83 | humidity | 50.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 944 | 51.84 | atmosphere | 1000.0 | 720 | > th | dose independent | sin | 20 | NA |
| 954 | 51.85 | radiation | 40.0 | 270 | < th | dose independent | sin | 19 | NA |