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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0116100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF597 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0186) R2 : 0.000128
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00946 (0.0392) R2dN8 : 0.000165 R2N8 : 0.000128
σ : 0.35
deviance : 56.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.31 0.343 3.22 0.134 0.095 1.7 0.0428 8.44 0.00701 7.47 10.26 617 -- --
55.68 0.35 3.19 0.0325 0.0947 -0.154 -0.0447 -- 0.00833 6.66 7.99 568 -- --
53.3 0.34 3.22 0.14 0.0951 1.75 -- 8.65 0.00879 7.27 10.3 617 -- --
55.64 0.347 3.19 0.0308 0.103 -0.121 -- -- 0.0111 6.47 10.7 826 -- --
53.76 0.341 3.22 0.137 -- 1.85 -- 9.41 0.00927 -- 10.31 632 -- --
55.77 0.35 3.19 0.0441 0.0987 -- -0.0677 -- 0.0122 6.46 -- -- -- --
55.78 0.35 3.19 0.0433 0.0984 -- -- -- 0.0125 6.62 -- -- -- --
55.76 0.348 3.2 0.0179 -- -0.168 -- -- -0.00538 -- 10.82 2038 -- --
55.33 0.346 3.19 -- 0.094 -0.173 -- -- 0.00243 6.55 10.8 2045 -- --
56.29 0.351 3.19 0.0456 -- -- -- -- 0.0145 -- -- -- -- --
55.83 0.35 3.19 -- 0.0989 -- -- -- 0.00771 6.59 -- -- -- --
55.75 0.348 3.19 -- -- -0.182 -- -- -0.00153 -- 10.8 2026 -- --
56.34 0.35 3.19 -- -- -- -- -- 0.00946 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.80 wind 1.0 30 < th dose dependent rect. 23 1
17 49.45 wind 1.0 30 < th dose dependent rect. 14 10
22 50.15 wind 1.0 30 < th dose dependent rect. 10 14
23 50.20 wind 1.0 30 < th dose dependent rect. 12 12
30 50.76 wind 1.0 90 < th dose independent rect. 22 2
65 51.83 wind 1.0 30 < th dose independent rect. 10 1
66 51.83 temperature 10.0 1440 > th dose independent rect. 11 1
70 51.83 atmosphere 995.0 1440 > th dose independent rect. 11 1
73 51.83 precipitation 0.1 1440 < th dose independent rect. 11 1
74 51.83 temperature 10.0 1440 > th dose independent rect. 12 23
77 51.83 wind 1.0 30 < th dose dependent rect. 10 1
78 51.83 precipitation 0.1 1440 < th dose dependent rect. 11 1
87 51.93 wind 1.0 270 < th dose dependent rect. 15 9
95 52.04 wind 1.0 30 < th dose independent rect. 10 14
106 52.18 humidity 70.0 30 < th dose independent rect. 10 1
108 52.18 temperature 25.0 30 > th dose dependent rect. 10 1
119 52.31 atmosphere 1010.0 30 < th dose independent rect. 10 1
124 52.38 radiation 40.0 30 < th dose independent rect. 10 1
129 52.43 humidity 70.0 30 < th dose dependent rect. 10 1
130 52.44 radiation 20.0 30 > th dose independent rect. 10 1
139 52.51 temperature 25.0 30 > th dose independent rect. 10 1
140 52.51 atmosphere 1005.0 30 > th dose independent rect. 10 1
152 52.57 atmosphere 1000.0 30 > th dose dependent rect. 10 1
173 52.67 temperature 30.0 30 < th dose independent rect. 10 1
177 52.70 wind 5.0 30 < th dose dependent rect. 10 1
184 52.72 humidity 60.0 30 > th dose independent rect. 10 1
187 52.75 temperature 10.0 30 > th dose independent rect. 10 1
194 52.75 precipitation 0.1 30 < th dose independent rect. 10 1
196 52.75 atmosphere 1000.0 10 < th dose independent rect. 17 10
199 52.75 temperature 10.0 30 > th dose independent rect. 11 23
200 52.75 precipitation 0.1 30 < th dose dependent rect. 10 1
206 52.78 wind 1.0 30 > th dose independent rect. 10 1
215 52.86 radiation 40.0 30 < th dose dependent rect. 10 1
216 52.87 atmosphere 1000.0 90 < th dose independent rect. 23 3
222 52.90 radiation 1.0 30 > th dose dependent rect. 10 1
223 52.94 atmosphere 1000.0 270 < th dose independent rect. 22 1
224 52.94 atmosphere 1000.0 10 < th dose independent rect. 23 4
235 52.96 atmosphere 1000.0 90 < th dose independent rect. 19 7
236 52.96 atmosphere 1000.0 10 < th dose dependent rect. 17 9
245 52.98 atmosphere 1000.0 10 < th dose independent rect. 20 7
313 53.14 atmosphere 1000.0 30 < th dose independent sin 12 NA
341 53.19 humidity 50.0 30 > th dose dependent rect. 10 1
357 53.22 humidity 80.0 14400 < th dose dependent rect. 1 8
364 53.23 wind 1.0 30 > th dose dependent rect. 10 1
365 53.23 atmosphere 1015.0 30 < th dose dependent rect. 10 1
370 53.24 atmosphere 1000.0 90 < th dose independent rect. 17 16
371 53.24 atmosphere 1000.0 10 < th dose dependent rect. 21 5
372 53.24 atmosphere 1000.0 270 < th dose dependent rect. 17 6
380 53.25 wind 9.0 720 > th dose dependent rect. 17 1
390 53.26 humidity 60.0 43200 < th dose independent rect. 11 1
413 53.27 atmosphere 1000.0 270 < th dose dependent rect. 22 1
425 53.28 atmosphere 1000.0 10 < th dose independent rect. 17 15
431 53.28 wind 9.0 720 > th dose dependent rect. 17 17
479 53.33 atmosphere 1000.0 270 < th dose independent rect. 17 14
481 53.33 wind 9.0 720 > th dose dependent rect. 14 4
498 53.34 wind 9.0 720 > th dose dependent sin 11 NA
499 53.34 wind 1.0 30 < th dose dependent sin 18 NA
508 53.35 atmosphere 1000.0 30 > th dose independent sin 14 NA
517 53.36 atmosphere 1000.0 90 < th dose independent rect. 19 14
532 53.37 wind 9.0 720 > th dose dependent rect. 17 6
545 53.38 atmosphere 1000.0 90 > th dose independent sin 12 NA
551 53.38 atmosphere 1000.0 90 < th dose independent rect. 21 12
577 53.39 wind 9.0 720 > th dose dependent rect. 14 20
578 53.40 wind 9.0 720 > th dose independent rect. 17 1
604 53.42 wind 1.0 90 > th dose independent sin 19 NA
668 53.46 wind 9.0 720 > th dose dependent rect. 14 8
682 53.47 atmosphere 1000.0 30 < th dose independent rect. 23 9
701 53.48 atmosphere 1000.0 90 > th dose independent rect. 9 23
708 53.49 wind 1.0 270 < th dose independent rect. 19 1
716 53.49 wind 1.0 270 < th dose dependent rect. 19 1
740 53.51 atmosphere 1000.0 10 > th dose independent rect. 10 23
829 53.56 atmosphere 1000.0 10 < th dose independent rect. 23 1
848 53.56 wind 9.0 720 > th dose independent rect. 17 17
853 53.56 atmosphere 1000.0 30 > th dose independent rect. 21 23
885 53.58 atmosphere 1000.0 10 < th dose dependent sin 12 NA
937 53.61 radiation 1.0 4320 < th dose dependent rect. 1 1
941 53.62 wind 9.0 720 < th dose independent sin 12 NA
943 53.62 wind 7.0 720 > th dose dependent rect. 14 1
952 53.64 wind 9.0 720 > th dose independent rect. 17 9
971 53.65 wind 9.0 720 > th dose independent rect. 17 6
988 53.66 wind 1.0 1440 < th dose dependent rect. 23 1