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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0666100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF597 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.45 (0.0716) R2 : 0.433
β1 : 4.36 (0.451) R2dD : 0.698 R2D : -0.14
β2 : 0.972 (0.125) R2dC : 0.0807 R2C : -0.00933
β3 : -3.03 (0.232) R2dE : 0.495 R2E : -0.00565
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.4 (1.62) R2dD*E : 0.202 R2D*E : -0.465
γ1 : 0.139 (0.152) R2dN8 : 0.00288 R2N8 : -0.0357
σ : 0.956
deviance : 421.18
__
_____
C
peak time of C : 0.547
E
wheather : temperature
threshold : 24.92
memory length : 1211
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
416.42 0.959 4.45 4.28 1.01 -3.05 -1.08 8.33 0.162 0.462 24.69 1187 -- --
465.05 1 4.66 2.59 0.837 -2.41 -1.64 -- -0.0706 22.5 22.54 2060 -- --
421.18 0.956 4.45 4.36 0.972 -3.03 -- 8.4 0.139 0.547 24.92 1211 -- --
445.82 0.983 4.62 2.72 0.78 -2.34 -- -- 0.0434 0.269 22.48 5547 -- --
451.43 0.99 4.41 4.59 -- -2.76 -- 8.65 0.145 -- 25.34 1518 -- --
602.15 1.15 4.76 1.53 0.521 -- -0.98 -- -0.651 0.203 -- -- -- --
606.24 1.15 4.76 1.56 0.526 -- -- -- -0.647 0.441 -- -- -- --
462.81 1 4.63 2.58 -- -2.17 -- -- -0.092 -- 22.11 6015 -- --
570.14 1.11 4.75 -- 0.695 -1.42 -- -- -0.59 0.904 26.53 6888 -- --
623.61 1.17 4.75 1.58 -- -- -- -- -0.639 -- -- -- -- --
670.71 1.21 4.8 -- 0.549 -- -- -- -0.822 0.585 -- -- -- --
595.59 1.14 4.71 -- -- -1.44 -- -- -0.539 -- 27.21 7402 -- --
689.62 1.23 4.79 -- -- -- -- -- -0.814 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 405.40 radiation 1 14400 < th dose dependent rect. 18 5
4 405.52 radiation 1 14400 < th dose dependent rect. 18 2
8 405.70 radiation 1 14400 < th dose dependent rect. 18 9
12 409.49 radiation 1 14400 < th dose independent rect. 18 6
14 409.55 radiation 1 14400 < th dose independent rect. 18 9
23 411.68 wind 7 43200 < th dose dependent rect. 11 1
24 411.82 wind 5 43200 > th dose dependent rect. 9 7
29 412.32 wind 5 43200 > th dose independent rect. 9 7
31 412.77 humidity 90 43200 > th dose independent rect. 21 2
33 413.04 wind 1 43200 > th dose dependent rect. 11 2
36 413.37 wind 5 43200 < th dose independent rect. 5 11
37 413.40 radiation 1 1440 < th dose dependent rect. 18 7
38 413.47 radiation 1 1440 < th dose dependent rect. 18 2
39 413.50 wind 5 43200 < th dose independent rect. 8 8
40 413.50 radiation 1 1440 < th dose dependent rect. 18 9
42 413.53 radiation 1 14400 < th dose dependent rect. 1 4
43 413.56 radiation 1 14400 > th dose independent rect. 18 1
53 413.56 radiation 1 1440 < th dose dependent rect. 18 5
61 413.83 radiation 20 14400 > th dose dependent rect. 16 15
64 414.05 radiation 20 14400 < th dose independent rect. 16 15
67 414.17 radiation 30 14400 < th dose dependent rect. 18 6
69 414.17 wind 5 43200 > th dose dependent rect. 5 11
72 414.22 wind 5 43200 > th dose independent rect. 5 11
83 414.51 radiation 40 14400 < th dose dependent rect. 18 2
98 414.85 humidity 90 43200 < th dose independent rect. 20 2
102 414.95 radiation 1 14400 < th dose dependent rect. 4 1
113 415.27 radiation 20 14400 < th dose dependent rect. 18 9
166 416.95 wind 5 43200 < th dose independent rect. 11 2
169 416.97 radiation 30 14400 < th dose independent rect. 15 17
174 417.14 radiation 1 14400 < th dose dependent rect. 21 8
179 417.20 wind 5 43200 > th dose dependent sin 0 NA
184 417.37 radiation 20 14400 < th dose independent rect. 16 8
186 417.40 radiation 20 14400 < th dose independent rect. 16 5
187 417.40 radiation 20 14400 < th dose independent rect. 16 11
193 417.45 humidity 90 43200 > th dose dependent rect. 21 1
200 417.51 wind 7 43200 > th dose independent rect. 24 16
209 417.73 wind 7 43200 < th dose independent rect. 24 16
225 418.19 wind 7 43200 < th dose independent sin 1 NA
228 418.21 wind 5 43200 > th dose independent rect. 11 3
253 418.89 wind 7 43200 > th dose independent sin 2 NA
261 418.99 wind 5 43200 > th dose dependent rect. 9 12
277 419.41 wind 5 43200 > th dose dependent rect. 5 16
285 419.52 radiation 30 14400 > th dose independent rect. 16 16
289 419.63 wind 7 43200 < th dose independent rect. 5 16
298 419.79 temperature 25 1440 > th dose dependent rect. 10 13
300 419.80 temperature 25 1440 > th dose dependent rect. 10 10
301 419.82 temperature 25 1440 > th dose dependent sin 21 NA
325 420.05 temperature 25 1440 > th dose dependent rect. 7 13
334 420.10 temperature 25 1440 > th dose dependent rect. 7 16
355 420.25 wind 5 43200 > th dose dependent rect. 24 17
364 420.36 wind 7 43200 > th dose independent rect. 5 16
410 420.78 temperature 25 1440 > th dose dependent rect. 16 1
436 420.96 wind 7 43200 < th dose independent rect. 24 21
486 421.35 wind 7 43200 > th dose independent rect. 24 21
504 421.56 radiation 10 14400 > th dose dependent rect. 17 1
555 421.74 temperature 25 1440 > th dose dependent rect. 10 23
560 421.77 radiation 30 14400 > th dose dependent rect. 15 17
616 422.10 temperature 25 1440 > th dose dependent rect. 22 22
630 422.17 temperature 25 1440 > th dose dependent rect. 13 23
645 422.28 temperature 25 1440 > th dose dependent no NA NA
663 422.36 temperature 25 1440 > th dose dependent rect. 15 3
688 422.64 radiation 1 1440 < th dose dependent rect. 11 19
715 422.83 wind 5 43200 > th dose dependent rect. 24 21
770 423.23 wind 7 43200 > th dose independent rect. 20 21
775 423.27 radiation 1 1440 < th dose dependent rect. 7 23
798 423.48 radiation 1 1440 < th dose dependent rect. 18 23
844 423.85 wind 7 43200 < th dose independent rect. 20 21
866 424.07 humidity 70 14400 < th dose independent rect. 18 13
891 424.21 wind 7 43200 < th dose independent rect. 5 20
895 424.25 humidity 70 14400 < th dose independent rect. 18 3
958 424.73 radiation 1 1440 < th dose dependent sin 14 NA
979 424.80 wind 7 43200 > th dose independent rect. 5 20
995 424.93 wind 9 43200 > th dose independent rect. 19 2