BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0666100 Os06g0666100|AK111793
(261 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31040.1 | chr1:11069793-11072182 REVERSE LENGTH=244 223 6e-59
AT2G12646.1 | chr2:5167179-5169022 REVERSE LENGTH=257 202 2e-52
AT3G60670.1 | chr3:22424695-22426074 REVERSE LENGTH=246 192 1e-49
AT1G21000.1 | chr1:7337919-7339088 FORWARD LENGTH=247 120 6e-28
AT1G32700.1 | chr1:11827588-11829444 FORWARD LENGTH=214 119 2e-27
AT1G43000.1 | chr1:16140816-16141655 FORWARD LENGTH=217 117 4e-27
AT1G76590.1 | chr1:28740875-28741894 FORWARD LENGTH=246 116 1e-26
AT4G17900.1 | chr4:9946046-9947697 FORWARD LENGTH=228 115 3e-26
AT2G27930.1 | chr2:11892369-11893488 FORWARD LENGTH=190 112 3e-25
AT2G01818.1 | chr2:353552-355370 REVERSE LENGTH=223 107 6e-24
AT5G46710.1 | chr5:18952839-18954484 REVERSE LENGTH=227 104 6e-23
AT2G17785.1 | chr2:7728186-7728927 REVERSE LENGTH=193 50 1e-06
>AT1G31040.1 | chr1:11069793-11072182 REVERSE LENGTH=244
Length = 243
Score = 223 bits (569), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/261 (48%), Positives = 149/261 (57%), Gaps = 34/261 (13%)
Query: 2 GMRPGWVGGLVEESFFVGCPAHESRKKNEKNIFCLGCCASICPHCAPSHRHHPLLQVRRY 61
+P W+ GL+ E+FF C HE+R+K+EKN+FCL CC S+CPHC PSHR HPLLQVRRY
Sbjct: 16 ATKPAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCLSVCPHCLPSHRSHPLLQVRRY 75
Query: 62 VYNDVVRLDDLDKLIDCSFVQPYTINSAKVIFLKPRPQSRPFKGSGNICLTCDRILQEPF 121
VY+DVVRL DL+KLIDCS+VQPYTIN AKVIFL R QSR K S N+C TCDRILQEPF
Sbjct: 76 VYHDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSRA-KVSSNVCFTCDRILQEPF 134
Query: 122 HFCCLSCKVDHVMMQGGDLSNILYMSGGSSGEPDLAAGFPRFENLRVXXXXXXXXXXXXX 181
HFC LSCKVD++ QG DLS+ILY E D FE LR+
Sbjct: 135 HFCSLSCKVDYLSYQGDDLSSILY----RIDESDFT-----FEGLRM------------- 172
Query: 182 XXXHQVTTPNSILEDPLXXXXXXXXXXXXXXXXXRSTSPAPTTADVPRKKKSXXXXXXXP 241
H S +ED + P P
Sbjct: 173 -DGHDQLGEISTMED--GEDILVISDESEQGNNSHKKEKKKSKKKKPESN-------YLP 222
Query: 242 QIVL-SLNNRRKGAPHRSPLA 261
+VL SL NRRKGAPHR+P +
Sbjct: 223 GMVLSSLGNRRKGAPHRAPFS 243
>AT2G12646.1 | chr2:5167179-5169022 REVERSE LENGTH=257
Length = 256
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/145 (64%), Positives = 112/145 (77%), Gaps = 1/145 (0%)
Query: 1 MGM-RPGWVGGLVEESFFVGCPAHESRKKNEKNIFCLGCCASICPHCAPSHRHHPLLQVR 59
MG+ +P W+ L E FFVGCP HE+ KKNE+N+ CL CC S+CPHC PSHR H LLQVR
Sbjct: 1 MGIQKPAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCCTSLCPHCVPSHRFHRLLQVR 60
Query: 60 RYVYNDVVRLDDLDKLIDCSFVQPYTINSAKVIFLKPRPQSRPFKGSGNICLTCDRILQE 119
RYVY+DVVRL+DL KLIDCS VQ YTINSAKV+F+K RPQ+R FKG+GN C +CDR LQE
Sbjct: 61 RYVYHDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQE 120
Query: 120 PFHFCCLSCKVDHVMMQGGDLSNIL 144
P+ C L CKVD VM + D++ L
Sbjct: 121 PYIHCSLGCKVDFVMKRYRDITPFL 145
>AT3G60670.1 | chr3:22424695-22426074 REVERSE LENGTH=246
Length = 245
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 84/143 (58%), Positives = 105/143 (73%)
Query: 2 GMRPGWVGGLVEESFFVGCPAHESRKKNEKNIFCLGCCASICPHCAPSHRHHPLLQVRRY 61
G P W+ L+++ FF C HE KKNEKNI C+ CC +ICPHC SH H LLQ+RRY
Sbjct: 4 GEFPAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCCLTICPHCLSSHTSHRLLQIRRY 63
Query: 62 VYNDVVRLDDLDKLIDCSFVQPYTINSAKVIFLKPRPQSRPFKGSGNICLTCDRILQEPF 121
VY DV+R++D KL+DCS +QPYT NS+KV+F+ RPQSR F+GSGNIC+TCDR LQ P+
Sbjct: 64 VYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRSLQSPY 123
Query: 122 HFCCLSCKVDHVMMQGGDLSNIL 144
FCCLSCK+ V+M+ LS L
Sbjct: 124 LFCCLSCKISDVIMRQRGLSGFL 146
>AT1G21000.1 | chr1:7337919-7339088 FORWARD LENGTH=247
Length = 246
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 3/145 (2%)
Query: 5 PGWVGGLVEESFFVGCPAHESRKKNEKNIFCLGCCA-SICPHCAPSHRHHPLLQVRRYVY 63
P W+ ++ S+FV C H KNE N+FCL C + C +C H+ H ++Q+RR Y
Sbjct: 16 PPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQIRRSSY 75
Query: 64 NDVVRLDDLDKLIDCSFVQPYTINSAKVIFLKPRPQSRPFKGSGNICLTCDRILQEPFHF 123
++VVR++++ K ID + VQ Y INSAK++FL RPQ R KG N C C R L + F F
Sbjct: 76 HNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRF 135
Query: 124 CCLSCKVDHVMMQGGDLSNILYMSG 148
C L CK+ M+ GDLS + G
Sbjct: 136 CSLGCKLGG--MRRGDLSLTFSLKG 158
>AT1G32700.1 | chr1:11827588-11829444 FORWARD LENGTH=214
Length = 213
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 5 PGWVGGLVEESFFVGCPAHESRKKNEKNIFCLGCCAS-ICPHCAPSHRHHPLLQVRRYVY 63
P W+ L+ E FFV C H K+E N++CL C +C C H+ H +Q+RR Y
Sbjct: 12 PHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSFHKDHHAIQIRRSSY 71
Query: 64 NDVVRLDDLDKLIDCSFVQPYTINSAKVIFLKPRPQSRPFKGSGNICLTCDRILQEPFHF 123
+DV+R+ ++ K +D + VQ Y INSAKV+FL RPQ RP KG N C C R L + F F
Sbjct: 72 HDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEVCYRSLVDSFRF 131
Query: 124 CCLSCKVDHV 133
C L CK+ +
Sbjct: 132 CSLGCKISGI 141
>AT1G43000.1 | chr1:16140816-16141655 FORWARD LENGTH=217
Length = 216
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 84/149 (56%), Gaps = 2/149 (1%)
Query: 3 MRPGWVGGLVEESFFVGCPAHESRKKNEKNIFCLGCCA-SICPHCAPSHRHHPLLQVRRY 61
M P W+ ++ +FV C H K+E N+FCL C + C C HR H ++Q+RR
Sbjct: 7 MTPPWLTPMLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLAHHRTHRVIQIRRS 66
Query: 62 VYNDVVRLDDLDKLIDCSFVQPYTINSAKVIFLKPRPQSRPFKGSGNICLTCDRILQEPF 121
Y++VVR+ ++ K ID S +Q Y INSAK+ FL RPQ R K C C R L + F
Sbjct: 67 SYHNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGKSLNKTCQICSRNLLDSF 126
Query: 122 HFCCLSCKVDHVMMQGGDLSNILYMSGGS 150
FC L+CK++ V G D + L+ SG S
Sbjct: 127 LFCSLACKLEGV-KNGEDPNLTLFHSGKS 154
>AT1G76590.1 | chr1:28740875-28741894 FORWARD LENGTH=246
Length = 245
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Query: 5 PGWVGGLVEESFFVGCPAHESRKKNEKNIFCLGCCA-SICPHCAPSHRHHPLLQVRRYVY 63
P W+ ++ ++F+ C H + K+E N+FCL C + + C +C +HR+H +LQ+RR Y
Sbjct: 18 PPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLNHRNHRVLQIRRSSY 77
Query: 64 NDVVRLDDLDKLIDCSFVQPYTINSAKVIFLKPRPQSRPFKGSGNICLTCDRILQEPFHF 123
++VVR++++ K ID S VQ Y INSA+++FL RPQ R KG N C C R L + F F
Sbjct: 78 HNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRF 137
Query: 124 CCLSCKV 130
C L CK+
Sbjct: 138 CSLGCKL 144
>AT4G17900.1 | chr4:9946046-9947697 FORWARD LENGTH=228
Length = 227
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Query: 5 PGWVGGLVEESFFVGCPAHESRKKNEKNIFCLGCCAS-ICPHCAPSHRHHPLLQVRRYVY 63
P W+ L++E FFV C H K+E N++CL C +C C H+ H +Q+RR Y
Sbjct: 34 PPWLKPLLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLAHHKDHRTIQIRRSSY 93
Query: 64 NDVVRLDDLDKLIDCSFVQPYTINSAKVIFLKPRPQSRPFKGSGNICLTCDR-ILQEPFH 122
+DV+R++++ K +D +Q Y INSAKV+FL RPQ RP KG N C C R ++ + F
Sbjct: 94 HDVIRVNEIQKYLDIGGIQTYVINSAKVVFLNERPQPRPGKGVTNTCKVCYRSLVDDSFR 153
Query: 123 FCCLSCKV 130
FC L CK+
Sbjct: 154 FCSLGCKI 161
>AT2G27930.1 | chr2:11892369-11893488 FORWARD LENGTH=190
Length = 189
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 11/138 (7%)
Query: 5 PGWVGGLVEESFFVGCPAHESRKKNEKNIFCLGC-CASICPHCAPS-HRHHPLLQVRRYV 62
P W+ GL+ +FF CP H +NE N+FCL C A+ C +C S H HP+LQ+RR
Sbjct: 4 PKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSS 63
Query: 63 YNDVVRLDDLDKLIDCSFVQPYTINSAKVIFLKPRPQ---------SRPFKGSGNICLTC 113
Y+DVVR+ +++ +D VQ Y INSA+V+FL RPQ S K C TC
Sbjct: 64 YHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETC 123
Query: 114 DRILQEPFHFCCLSCKVD 131
R L +PF FC L CKV+
Sbjct: 124 CRTLLDPFRFCSLGCKVE 141
>AT2G01818.1 | chr2:353552-355370 REVERSE LENGTH=223
Length = 222
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 76/134 (56%), Gaps = 10/134 (7%)
Query: 7 WVGGLVEESFFVGCPAHESRKKNEKNIFCLGCCASICPHC----APSHRHHPLLQVRRYV 62
W+ L+ FF C H+ +KNEKN+FC+ C IC HC SH H LQ+ +YV
Sbjct: 13 WIETLLNSEFFGICMNHKYLRKNEKNVFCIDCNVEICRHCCNTVTDSHFLHRRLQICKYV 72
Query: 63 YNDVVRLDDLDKLIDCSFVQPYTINSAKVIFLKPRPQSRPFKGS-----GNICLTCDRIL 117
Y DV+RL ++ DCS +Q Y IN K I L RPQ++ + S G C+TC R +
Sbjct: 73 YQDVIRLLEIQNYFDCSEIQTYKINGEKAIHLNSRPQAKDARPSTKAKNGASCVTCKRYI 132
Query: 118 QE-PFHFCCLSCKV 130
Q+ P FC +SCK+
Sbjct: 133 QDHPNLFCSISCKI 146
>AT5G46710.1 | chr5:18952839-18954484 REVERSE LENGTH=227
Length = 226
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 5 PGWVGGLVEESFFVGCPAHESRKKNEKNIFCLGCCA-SICPHCAPSHRHHPLLQVRRYVY 63
P W+ L+ + FF C H + E ++CL C S C C H +H +Q+R Y
Sbjct: 28 PIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLSEHENHRTIQIRISSY 87
Query: 64 NDVVRLDDLDKLIDCSFVQPYTINSAKVIFLKPRPQSRPFKGSGNICLTCDRILQEP-FH 122
++V ++D++ K +D S +Q Y INS+KV+FL RPQS+P KG N C+ C R L E F
Sbjct: 88 HNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKGFTNACMVCYRGLAENCFR 147
Query: 123 FCCLSCKV 130
FC + CKV
Sbjct: 148 FCSIGCKV 155
>AT2G17785.1 | chr2:7728186-7728927 REVERSE LENGTH=193
Length = 192
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 12/158 (7%)
Query: 4 RPGWVGGLVEESFFVGCPAHESRKKNEKNIFCLGCCASICPHCAPSHRHHPLLQVRRYVY 63
+P W L EE H + KNIF C +CP + P +QV +
Sbjct: 3 KPRWFQVLTEEDLDGNYQKHTCGFR--KNIFRFESCDVVCPEGIDPNHIQPHVQVCTMLD 60
Query: 64 NDVVRLDDLDKLIDCSFVQPY-TINSAKVIFLKP-RPQSRPFKGSGNICLTCDRILQE-P 120
+ L+ + L DCS +Q + + + I L+P R R +G C + +Q
Sbjct: 61 LNAFELNQISDLFDCSQIQNHGYVGGKQFIMLRPWRDCVRNTEG-------CTKHVQGIN 113
Query: 121 FHFCCLSCKVDHVMMQGGDLSNILYMSGGSSGEPDLAA 158
FC +CK++HV+ GDLS+I + +L+
Sbjct: 114 SKFCTFTCKIEHVLEHEGDLSSITRLWSSEDDSRELSE 151
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,315,905
Number of extensions: 209257
Number of successful extensions: 389
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 12
Length of query: 261
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 164
Effective length of database: 8,447,217
Effective search space: 1385343588
Effective search space used: 1385343588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)