BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0502600 Os08g0502600|AK107730
(135 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0502600 Calcium-binding EF-hand domain containing protein 234 2e-62
Os09g0483300 Calcium-binding EF-hand domain containing protein 196 4e-51
Os09g0483100 EF-Hand type domain containing protein 196 4e-51
Os09g0483500 Calcium-binding EF-hand domain containing protein 193 4e-50
Os09g0482840 Calcium-binding EF-hand domain containing protein 189 6e-49
Os09g0482800 Calcium-binding EF-hand domain containing protein 188 9e-49
AK121706 188 9e-49
Os10g0116300 EF-Hand type domain containing protein 100 3e-22
Os03g0411300 EF-Hand type domain containing protein 99 8e-22
>Os08g0502600 Calcium-binding EF-hand domain containing protein
Length = 135
Score = 234 bits (596), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/135 (91%), Positives = 123/135 (91%)
Query: 1 MSVEIVDGSTVRSFVDDEAAFNASVDGRFAALDADRDGVLSYADMSGELMALRVLDTHFX 60
MSVEIVDGSTVRSFVDDEAAFNASVDGRFAALDADRDGVLSYADMSGELMALRVLDTHF
Sbjct: 1 MSVEIVDGSTVRSFVDDEAAFNASVDGRFAALDADRDGVLSYADMSGELMALRVLDTHFG 60
Query: 61 XXXXXXXXXXXLYRGLFARFDRDGDGKVGLHEFRAEMKEVMLVVANGLGFLPVQMVVEDG 120
LYRGLFARFDRDGDGKVGLHEFRAEMKEVMLVVANGLGFLPVQMVVEDG
Sbjct: 61 VDDGHGGADDGLYRGLFARFDRDGDGKVGLHEFRAEMKEVMLVVANGLGFLPVQMVVEDG 120
Query: 121 SFLKVAVDRELAKAA 135
SFLKVAVDRELAKAA
Sbjct: 121 SFLKVAVDRELAKAA 135
>Os09g0483300 Calcium-binding EF-hand domain containing protein
Length = 140
Score = 196 bits (498), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/139 (74%), Positives = 114/139 (82%), Gaps = 4/139 (2%)
Query: 1 MSVEIVDGSTVRSFVDDEAAFNASVDGRFAALDADRDGVLSYADMSGELMALRVLDTHFX 60
MSVEI+DG TVRSFV+DE AFN+SVDGRFAALDA+RDGVLSYA+M+GELM+LRVL+ HF
Sbjct: 1 MSVEILDGKTVRSFVEDEGAFNSSVDGRFAALDANRDGVLSYAEMAGELMSLRVLEKHFG 60
Query: 61 X----XXXXXXXXXXLYRGLFARFDRDGDGKVGLHEFRAEMKEVMLVVANGLGFLPVQMV 116
LYRGLFARFDRDG G V L EFRAEMKEV+L VANGLGFLPVQMV
Sbjct: 61 ADEDEAAMGADELAALYRGLFARFDRDGSGGVDLEEFRAEMKEVLLAVANGLGFLPVQMV 120
Query: 117 VEDGSFLKVAVDRELAKAA 135
VE+GSFLKVAVDRELA AA
Sbjct: 121 VEEGSFLKVAVDRELAGAA 139
>Os09g0483100 EF-Hand type domain containing protein
Length = 138
Score = 196 bits (498), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/138 (73%), Positives = 115/138 (83%), Gaps = 3/138 (2%)
Query: 1 MSVEIVDGSTVRSFVDDEAAFNASVDGRFAALDADRDGVLSYADMSGELMALRVLDTHFX 60
MSVEI+DG TVRSFV+DE AFN+SVDGRFAALDA+RDG+LSY +M+GELM+LRVL+ HF
Sbjct: 1 MSVEILDGKTVRSFVEDEGAFNSSVDGRFAALDANRDGLLSYTEMAGELMSLRVLEKHFG 60
Query: 61 ---XXXXXXXXXXXLYRGLFARFDRDGDGKVGLHEFRAEMKEVMLVVANGLGFLPVQMVV 117
LYRGLFARFDRDG+G V L EFRAEMKE++L VANGLGFLPVQMVV
Sbjct: 61 VDDEAAMGADELVELYRGLFARFDRDGNGAVDLEEFRAEMKEMLLAVANGLGFLPVQMVV 120
Query: 118 EDGSFLKVAVDRELAKAA 135
E+GSFLKVAVDRELAKAA
Sbjct: 121 EEGSFLKVAVDRELAKAA 138
>Os09g0483500 Calcium-binding EF-hand domain containing protein
Length = 137
Score = 193 bits (490), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 98/137 (71%), Positives = 113/137 (82%), Gaps = 2/137 (1%)
Query: 1 MSVEIVDGSTVRSFVDDEAAFNASVDGRFAALDADRDGVLSYADMSGELMALRVLDTHFX 60
MSVEI+DG T+RSFV+DE AFN+SVDGRFAALD +RDG+LSY++M+ ELM+LRVL+ HF
Sbjct: 1 MSVEILDGKTIRSFVEDEGAFNSSVDGRFAALDTNRDGLLSYSEMAKELMSLRVLEKHFG 60
Query: 61 --XXXXXXXXXXXLYRGLFARFDRDGDGKVGLHEFRAEMKEVMLVVANGLGFLPVQMVVE 118
+YRGL+ARFD DG+G V L EFRAEMKEVML VANGLGFLPVQMVVE
Sbjct: 61 VDEAAMSSDELVEMYRGLYARFDHDGNGTVDLEEFRAEMKEVMLAVANGLGFLPVQMVVE 120
Query: 119 DGSFLKVAVDRELAKAA 135
+GSFLKVAVDRELAKAA
Sbjct: 121 EGSFLKVAVDRELAKAA 137
>Os09g0482840 Calcium-binding EF-hand domain containing protein
Length = 137
Score = 189 bits (480), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/137 (72%), Positives = 110/137 (80%), Gaps = 2/137 (1%)
Query: 1 MSVEIVDGSTVRSFVDDEAAFNASVDGRFAALDADRDGVLSYADMSGELMALRVLDTHFX 60
MSVEI+DG TV SFV+DE AFN+SVDGRFAALD +RDG+LSYA+M+ ELM+LRVLD HF
Sbjct: 1 MSVEILDGKTVLSFVEDEGAFNSSVDGRFAALDTNRDGLLSYAEMANELMSLRVLDKHFG 60
Query: 61 --XXXXXXXXXXXLYRGLFARFDRDGDGKVGLHEFRAEMKEVMLVVANGLGFLPVQMVVE 118
LY GLF RFDRDG G V L EFRAEMKEV+L VANGLGFLPVQMVVE
Sbjct: 61 VDEAAMGADELVELYHGLFLRFDRDGSGAVDLEEFRAEMKEVLLAVANGLGFLPVQMVVE 120
Query: 119 DGSFLKVAVDRELAKAA 135
+GSFLKVAVDRELAKAA
Sbjct: 121 EGSFLKVAVDRELAKAA 137
>Os09g0482800 Calcium-binding EF-hand domain containing protein
Length = 137
Score = 188 bits (478), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 101/137 (73%), Positives = 111/137 (81%), Gaps = 2/137 (1%)
Query: 1 MSVEIVDGSTVRSFVDDEAAFNASVDGRFAALDADRDGVLSYADMSGELMALRVLDTHFX 60
MSVEI+DG TV SFV+DE AFN++VD RFAALD DRDG LSYADM+GELM+LRVL+THF
Sbjct: 1 MSVEILDGRTVESFVEDEGAFNSTVDDRFAALDGDRDGRLSYADMAGELMSLRVLETHFG 60
Query: 61 X--XXXXXXXXXXLYRGLFARFDRDGDGKVGLHEFRAEMKEVMLVVANGLGFLPVQMVVE 118
LYRGLFARFDRDGDG V EFRAEMKEVML VA+GLGFLPVQMVVE
Sbjct: 61 VDGAAATDAELVDLYRGLFARFDRDGDGAVDREEFRAEMKEVMLAVASGLGFLPVQMVVE 120
Query: 119 DGSFLKVAVDRELAKAA 135
+GSFLK AV+RELAKAA
Sbjct: 121 EGSFLKRAVERELAKAA 137
>AK121706
Length = 137
Score = 188 bits (478), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 101/137 (73%), Positives = 111/137 (81%), Gaps = 2/137 (1%)
Query: 1 MSVEIVDGSTVRSFVDDEAAFNASVDGRFAALDADRDGVLSYADMSGELMALRVLDTHFX 60
MSVEI+DG TV SFV+DE AFN++VD RFAALD DRDG LSYADM+GELM+LRVL+THF
Sbjct: 1 MSVEILDGRTVESFVEDEGAFNSTVDDRFAALDGDRDGRLSYADMAGELMSLRVLETHFG 60
Query: 61 X--XXXXXXXXXXLYRGLFARFDRDGDGKVGLHEFRAEMKEVMLVVANGLGFLPVQMVVE 118
LYRGLFARFDRDGDG V EFRAEMKEVML VA+GLGFLPVQMVVE
Sbjct: 61 VDGAAATDAELVDLYRGLFARFDRDGDGAVDREEFRAEMKEVMLAVASGLGFLPVQMVVE 120
Query: 119 DGSFLKVAVDRELAKAA 135
+GSFLK AV+RELAKAA
Sbjct: 121 EGSFLKRAVERELAKAA 137
>Os10g0116300 EF-Hand type domain containing protein
Length = 101
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 36 RDGVLSYADMSGELMALRVLDTHFX--XXXXXXXXXXXLYRGLFARFDRDGDGKVGLHEF 93
RD +LSY +M+ ELM+LR+LD HF LYRGLFA FDRDG G V L EF
Sbjct: 4 RDVLLSYVEMANELMSLRMLDKHFGDDEAVMSADELVKLYRGLFAWFDRDGSGAVELEEF 63
Query: 94 RAEMKEVMLVVANGLGFLPVQMVVEDG 120
RAEMKEV+L VA+GLGFL VQMVVEDG
Sbjct: 64 RAEMKEVLLAVASGLGFLLVQMVVEDG 90
>Os03g0411300 EF-Hand type domain containing protein
Length = 158
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
Query: 1 MSVEIVDGSTVRSFVDDEAAFNASVDGRFAALDADRDGVLSYADMSGELMALRVLDTH-- 58
MSV I+DGSTVR FV D+ AF SVD RF ALDA+ DGVLS A++ L + R+LD
Sbjct: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALDANGDGVLSRAELRRALESFRLLDGAGF 60
Query: 59 -FXXXXXXXXXXXXLYRGLFARFDRDGDGKVGLHEFRAEMKEVMLVVANGLGFLPVQMVV 117
LY +F +FD D G V EFR +M+ +ML VA+GLG P+Q+ V
Sbjct: 61 GSAEPAPLPAEVSALYDSVFEQFDADHSGAVDRAEFRDQMRRIMLAVADGLGSQPLQVAV 120
Query: 118 ED--GSFLKVAVDRELAKAA 135
+D GSFL A + E A A
Sbjct: 121 DDEGGSFLLEAAEHEAASIA 140
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,709,393
Number of extensions: 127631
Number of successful extensions: 488
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 9
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 150 (62.4 bits)