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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0502600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Calcium-binding EF-hand domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0153) R2 : 0.0147
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0841 (0.0322) R2dN8 : 0.019 R2N8 : 0.0147
σ : 0.288
deviance : 38.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.77 0.277 3.26 0.2 0.104 0.202 0.0957 1.1 -0.0987 8.63 93.81 5988 -- --
36.5 0.281 3.25 0.114 0.0947 0.232 0.097 -- -0.124 8.84 112.6 5731 -- --
34.79 0.275 3.26 0.2 0.104 0.205 -- 1.1 -0.1 8.32 92.99 5935 -- --
36.52 0.281 3.25 0.122 0.099 0.24 -- -- -0.123 8.07 92 5866 -- --
35.38 0.277 3.26 0.196 -- 0.207 -- 1.09 -0.0989 -- 92.03 5913 -- --
37.24 0.286 3.24 0.1 0.0985 -- 0.0872 -- -0.0735 8.73 -- -- -- --
37.26 0.286 3.24 0.103 0.0999 -- -- -- -0.0737 8.32 -- -- -- --
37.06 0.284 3.25 0.121 -- 0.246 -- -- -0.122 -- 92 5817 -- --
36.84 0.283 3.25 -- 0.123 0.236 -- -- -0.132 7.77 89 4788 -- --
37.82 0.287 3.24 0.103 -- -- -- -- -0.0726 -- -- -- -- --
37.54 0.287 3.24 -- 0.1 -- -- -- -0.0852 8.24 -- -- -- --
37.44 0.285 3.26 -- -- 0.221 -- -- -0.132 -- 91 5791 -- --
38.1 0.288 3.24 -- -- -- -- -- -0.0841 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.39 atmosphere 1000.0 30 > th dose independent rect. 3 23
4 33.73 atmosphere 1005.0 10 > th dose dependent rect. 2 2
5 33.80 atmosphere 1010.0 30 < th dose dependent rect. 2 1
11 34.01 temperature 15.0 10 > th dose independent rect. 3 23
12 34.02 wind 3.0 10 < th dose independent rect. 2 1
13 34.02 wind 3.0 10 < th dose dependent rect. 2 1
19 34.05 temperature 25.0 10 < th dose independent rect. 2 1
25 34.07 temperature 10.0 10 > th dose independent rect. 2 1
28 34.07 humidity 50.0 10 > th dose independent rect. 2 1
31 34.07 atmosphere 995.0 10 > th dose independent rect. 2 1
32 34.07 atmosphere 1010.0 10 < th dose independent rect. 2 1
34 34.07 radiation 1.0 10 < th dose independent rect. 2 1
39 34.07 precipitation 0.1 10 < th dose independent rect. 2 1
41 34.07 radiation 1.0 10 < th dose dependent rect. 2 1
46 34.07 precipitation 0.1 10 < th dose dependent rect. 2 1
48 34.09 temperature 10.0 10 > th dose dependent rect. 2 1
49 34.09 humidity 50.0 10 > th dose dependent rect. 2 1
55 34.13 temperature 30.0 10 < th dose dependent rect. 2 1
102 34.21 wind 1.0 30 > th dose independent rect. 2 1
104 34.21 humidity 80.0 14400 < th dose dependent rect. 2 7
108 34.23 atmosphere 995.0 30 > th dose dependent rect. 2 1
112 34.26 wind 9.0 10 < th dose independent rect. 3 23
128 34.51 humidity 80.0 14400 < th dose dependent rect. 21 13
136 34.56 atmosphere 1000.0 720 > th dose independent rect. 3 8
148 34.64 humidity 50.0 30 > th dose independent rect. 3 23
151 34.67 precipitation 0.1 720 < th dose independent rect. 15 8
152 34.67 precipitation 0.1 720 < th dose dependent rect. 15 8
154 34.68 atmosphere 995.0 720 > th dose independent rect. 23 16
158 34.75 humidity 90.0 720 > th dose independent rect. 3 1
159 34.75 humidity 90.0 90 < th dose independent rect. 2 2
169 34.81 humidity 90.0 720 < th dose independent rect. 1 3
170 34.81 humidity 70.0 14400 > th dose independent rect. 5 5
176 34.81 humidity 70.0 14400 > th dose independent rect. 22 12
179 34.82 humidity 70.0 14400 > th dose independent rect. 7 3
182 34.84 precipitation 0.1 30 < th dose independent rect. 3 23
183 34.84 radiation 1.0 43200 < th dose dependent rect. 3 1
184 34.84 precipitation 0.1 30 < th dose dependent rect. 3 23
185 34.85 humidity 70.0 14400 < th dose independent rect. 7 3
212 34.93 wind 1.0 14400 < th dose dependent rect. 6 1
218 34.96 temperature 10.0 720 > th dose independent rect. 15 8
219 34.96 temperature 10.0 720 > th dose independent rect. 23 16
237 34.98 precipitation 0.1 720 < th dose independent rect. 11 16
246 34.98 precipitation 0.1 720 < th dose dependent rect. 11 16
249 34.99 wind 5.0 14400 < th dose dependent rect. 10 2
259 35.04 wind 3.0 14400 > th dose independent rect. 10 2
261 35.04 temperature 10.0 720 > th dose independent rect. 3 8
263 35.04 temperature 10.0 720 > th dose independent rect. 11 16
279 35.06 wind 9.0 4320 < th dose independent rect. 3 1
284 35.07 humidity 90.0 720 < th dose independent rect. 24 8
290 35.08 temperature 10.0 1440 > th dose independent rect. 3 1
293 35.08 temperature 30.0 1440 < th dose independent rect. 3 1
297 35.08 humidity 50.0 1440 > th dose independent rect. 3 1
306 35.08 atmosphere 995.0 1440 > th dose independent rect. 3 1
307 35.08 radiation 1.0 1440 < th dose independent rect. 3 1
327 35.08 wind 9.0 720 < th dose independent rect. 3 8
328 35.08 temperature 10.0 1440 > th dose independent rect. 4 23
347 35.10 wind 5.0 14400 < th dose independent rect. 11 4
349 35.10 atmosphere 1015.0 720 < th dose independent rect. 3 8
367 35.16 radiation 10.0 30 < th dose dependent rect. 3 23
369 35.17 humidity 80.0 720 > th dose dependent rect. 3 1
373 35.18 wind 3.0 14400 < th dose independent rect. 10 2
375 35.19 wind 1.0 14400 < th dose independent rect. 4 3
376 35.19 wind 5.0 14400 > th dose independent rect. 11 4
390 35.22 humidity 90.0 90 < th dose dependent rect. 2 1
394 35.24 wind 1.0 14400 > th dose independent rect. 4 3
400 35.24 humidity 50.0 720 > th dose independent rect. 3 8
402 35.24 radiation 40.0 720 < th dose independent rect. 15 8
407 35.24 atmosphere 1000.0 90 < th dose independent rect. 6 20
408 35.24 wind 1.0 14400 > th dose dependent rect. 11 1
416 35.25 humidity 80.0 14400 < th dose dependent sin 8 NA
417 35.25 humidity 50.0 14400 > th dose dependent rect. 8 1
418 35.25 humidity 70.0 4320 > th dose dependent rect. 3 8
419 35.25 humidity 50.0 4320 > th dose dependent rect. 3 12
421 35.25 humidity 50.0 4320 > th dose dependent rect. 23 16
435 35.27 humidity 70.0 1440 < th dose independent rect. 10 1
438 35.27 atmosphere 1000.0 10 > th dose independent rect. 2 14
448 35.28 humidity 70.0 4320 > th dose independent rect. 8 9
473 35.28 wind 3.0 14400 > th dose dependent rect. 10 5
477 35.29 humidity 60.0 14400 < th dose independent rect. 11 1
479 35.29 wind 5.0 14400 < th dose independent rect. 10 7
480 35.29 humidity 70.0 4320 > th dose independent rect. 8 7
496 35.29 humidity 50.0 4320 > th dose dependent sin 4 NA
513 35.30 wind 3.0 14400 > th dose independent rect. 19 1
518 35.30 temperature 30.0 1440 < th dose independent rect. 14 21
524 35.30 humidity 90.0 4320 < th dose dependent rect. 3 13
530 35.30 humidity 90.0 4320 < th dose dependent rect. 23 17
532 35.31 humidity 70.0 4320 > th dose independent sin 3 NA
570 35.32 precipitation 0.1 720 < th dose independent rect. 5 12
571 35.32 temperature 30.0 1440 > th dose independent rect. 14 21
572 35.32 atmosphere 1000.0 30 > th dose independent rect. 23 23
582 35.32 precipitation 0.1 720 < th dose dependent rect. 5 12
588 35.33 wind 5.0 14400 > th dose independent rect. 10 7
620 35.34 humidity 70.0 4320 < th dose independent rect. 8 9
643 35.34 wind 1.0 14400 < th dose dependent rect. 2 6
660 35.34 temperature 25.0 10 > th dose dependent rect. 16 19
672 35.35 humidity 80.0 90 < th dose dependent rect. 24 3
692 35.36 humidity 70.0 4320 > th dose independent rect. 10 1
702 35.36 humidity 70.0 4320 < th dose independent rect. 8 7
734 35.36 humidity 90.0 4320 < th dose dependent sin 4 NA
738 35.36 humidity 80.0 4320 < th dose dependent rect. 14 1
741 35.36 humidity 80.0 90 < th dose dependent rect. 24 5
772 35.37 wind 9.0 720 < th dose independent rect. 15 8
779 35.37 atmosphere 1000.0 90 > th dose independent rect. 3 10
803 35.37 radiation 1.0 90 < th dose independent rect. 3 22
810 35.37 humidity 90.0 4320 < th dose dependent rect. 11 4
812 35.37 temperature 25.0 720 > th dose dependent rect. 3 5
913 35.40 humidity 70.0 4320 < th dose independent sin 2 NA
935 35.40 humidity 50.0 4320 > th dose dependent rect. 10 5
955 35.41 wind 3.0 14400 < th dose independent rect. 19 1
956 35.41 wind 1.0 14400 > th dose independent rect. 1 2