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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0483100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EF-Hand type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0153) R2 : 0.000153
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00849 (0.0322) R2dN8 : 0.000197 R2N8 : 0.000153
σ : 0.288
deviance : 38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.51 0.276 3.17 0.0708 0.198 0.28 -0.241 0.662 -0.0558 7.12 89 4844 -- --
35.07 0.276 3.16 0.0277 0.196 0.315 -0.313 -- -0.0662 6.93 88 4785 -- --
34.64 0.274 3.17 0.0661 0.201 0.277 -- 0.763 -0.0546 7.31 89 4970 -- --
35.34 0.277 3.16 0.0221 0.199 0.308 -- -- -0.0691 7.18 88.05 4820 -- --
36.09 0.28 3.17 0.0833 -- 0.248 -- 0.749 -0.05 -- 89 5812 -- --
36.3 0.282 3.15 0.0184 0.165 -- -0.314 -- -0.0104 7.12 -- -- -- --
36.55 0.283 3.15 0.0126 0.164 -- -- -- -0.00946 7.42 -- -- -- --
36.84 0.283 3.17 0.0461 -- 0.285 -- -- -0.0658 -- 88.43 7153 -- --
35.35 0.277 3.16 -- 0.199 0.309 -- -- -0.0704 7.16 88 4819 -- --
37.99 0.288 3.16 0.0152 -- -- -- -- -0.00681 -- -- -- -- --
36.56 0.283 3.15 -- 0.165 -- -- -- -0.0109 7.41 -- -- -- --
36.8 0.283 3.17 -- -- 0.304 -- -- -0.0768 -- 96 4286 -- --
38 0.288 3.16 -- -- -- -- -- -0.00849 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.79 radiation 10.0 30 > th dose independent rect. 6 2
15 32.40 temperature 25.0 90 < th dose independent rect. 6 1
17 32.64 humidity 90.0 90 < th dose independent rect. 2 6
44 32.75 radiation 10.0 10 > th dose dependent rect. 6 1
70 32.94 radiation 10.0 30 > th dose independent sin 11 NA
75 33.14 wind 3.0 10 < th dose dependent rect. 6 2
96 33.37 humidity 80.0 10 < th dose independent rect. 7 1
101 33.50 temperature 25.0 10 > th dose independent rect. 5 3
108 33.60 humidity 80.0 10 < th dose independent rect. 23 9
109 33.61 humidity 90.0 90 < th dose dependent rect. 2 5
111 33.62 atmosphere 1000.0 30 > th dose independent rect. 8 22
119 33.69 atmosphere 1000.0 30 > th dose dependent rect. 6 2
120 33.69 atmosphere 1005.0 30 > th dose dependent rect. 2 6
142 33.75 temperature 30.0 90 < th dose dependent rect. 6 1
147 33.77 wind 3.0 30 < th dose independent rect. 6 2
152 33.79 atmosphere 1005.0 30 > th dose independent rect. 6 2
159 33.81 humidity 80.0 14400 < th dose dependent rect. 7 2
160 33.82 wind 9.0 4320 < th dose independent rect. 7 2
175 33.89 humidity 70.0 14400 > th dose independent rect. 8 1
176 33.89 wind 1.0 30 > th dose independent rect. 6 2
186 33.92 humidity 90.0 10 < th dose dependent rect. 6 2
191 33.93 humidity 90.0 10 < th dose dependent rect. 3 5
202 33.97 temperature 10.0 1440 > th dose independent rect. 7 2
206 33.97 humidity 50.0 1440 > th dose independent rect. 7 2
208 33.97 atmosphere 995.0 1440 > th dose independent rect. 7 2
209 33.97 atmosphere 1015.0 1440 < th dose independent rect. 7 2
211 33.97 temperature 10.0 1440 > th dose independent rect. 9 22
220 33.98 temperature 10.0 30 > th dose independent rect. 6 2
223 33.98 humidity 50.0 30 > th dose independent rect. 6 2
225 33.98 atmosphere 995.0 30 > th dose independent rect. 6 2
226 33.98 atmosphere 1015.0 30 < th dose independent rect. 6 2
227 33.98 precipitation 0.1 30 < th dose independent rect. 6 2
228 33.98 temperature 10.0 30 > th dose independent rect. 8 22
230 33.98 precipitation 0.1 30 < th dose dependent rect. 6 2
234 33.99 humidity 50.0 30 > th dose independent rect. 8 22
236 34.00 humidity 70.0 14400 > th dose independent rect. 5 4
248 34.01 humidity 70.0 14400 < th dose independent rect. 8 1
265 34.01 wind 1.0 14400 < th dose dependent rect. 6 1
266 34.01 temperature 10.0 30 > th dose dependent rect. 6 2
274 34.02 humidity 80.0 30 > th dose dependent rect. 6 1
277 34.03 precipitation 0.1 30 < th dose independent rect. 8 22
279 34.03 precipitation 0.1 30 < th dose dependent rect. 8 22
287 34.06 radiation 40.0 30 < th dose independent rect. 6 2
289 34.07 humidity 60.0 14400 < th dose dependent rect. 12 1
291 34.08 wind 9.0 30 < th dose independent rect. 8 22
341 34.14 humidity 70.0 14400 < th dose independent rect. 7 3
405 34.22 humidity 80.0 4320 > th dose independent rect. 7 6
412 34.23 radiation 10.0 30 < th dose independent sin 11 NA
413 34.23 humidity 80.0 4320 > th dose independent rect. 4 9
422 34.24 humidity 80.0 4320 < th dose independent rect. 7 6
427 34.24 humidity 50.0 4320 > th dose dependent rect. 11 1
440 34.25 humidity 80.0 4320 < th dose independent rect. 4 9
447 34.25 humidity 60.0 4320 > th dose dependent rect. 3 9
463 34.27 precipitation 0.1 720 < th dose independent rect. 15 16
475 34.27 humidity 50.0 4320 > th dose dependent rect. 23 14
476 34.27 precipitation 0.1 720 < th dose dependent rect. 15 16
492 34.29 humidity 60.0 14400 < th dose independent rect. 11 1
508 34.30 humidity 50.0 14400 > th dose independent rect. 15 1
522 34.30 humidity 90.0 4320 < th dose dependent rect. 23 14
532 34.31 atmosphere 1000.0 90 > th dose independent rect. 8 11
548 34.32 atmosphere 995.0 720 > th dose independent rect. 7 8
552 34.32 temperature 30.0 30 < th dose independent rect. 8 22
553 34.32 humidity 50.0 4320 > th dose dependent sin 5 NA
566 34.32 humidity 60.0 14400 < th dose dependent rect. 18 22
614 34.34 humidity 90.0 90 < th dose independent rect. 2 19
618 34.34 humidity 90.0 4320 < th dose dependent rect. 11 1
619 34.34 radiation 40.0 90 < th dose dependent rect. 6 1
636 34.35 humidity 90.0 4320 < th dose dependent sin 5 NA
662 34.36 radiation 20.0 10 < th dose independent rect. 6 2
666 34.36 radiation 10.0 30 > th dose independent rect. 13 19
669 34.36 humidity 60.0 14400 < th dose dependent sin 22 NA
686 34.36 humidity 90.0 4320 < th dose dependent rect. 3 10
740 34.37 precipitation 0.1 720 < th dose independent rect. 19 8
748 34.37 humidity 50.0 90 > th dose dependent rect. 6 1
758 34.37 precipitation 0.1 720 < th dose dependent rect. 19 8
787 34.38 humidity 50.0 14400 > th dose independent rect. 13 20
788 34.38 radiation 1.0 30 > th dose independent rect. 8 22
792 34.38 humidity 60.0 14400 < th dose dependent no NA NA
905 34.39 humidity 50.0 14400 > th dose independent rect. 13 6
933 34.39 humidity 70.0 4320 > th dose dependent rect. 7 5
990 34.40 humidity 80.0 4320 > th dose dependent rect. 7 2