Os09g0483500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calcium-binding EF-hand domain containing protein.
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Os09g0483500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calcium-binding EF-hand domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 286.62 | 0.795 | 2.99 | 0.504 | 0.916 | 0.943 | 4.03 | 3.78 | 0.121 | 12.5 | 7.363 | 134 | -- | -- |
| 307.27 | 0.816 | 3 | 0.602 | 0.0621 | 0.4 | 0.126 | -- | 0.119 | 10.1 | 183.2 | 169 | -- | -- |
| 305.11 | 0.814 | 2.99 | 0.625 | 0.109 | 0.488 | -- | 1.1 | 0.131 | 10 | 414 | 88 | -- | -- |
| 300.9 | 0.808 | 3.04 | 0.42 | 0.479 | 0.67 | -- | -- | 0.0457 | 13.3 | 11.88 | 186 | -- | -- |
| 304.68 | 0.813 | 3 | 0.621 | -- | 0.367 | -- | 1.1 | 0.118 | -- | 435.4 | 190 | -- | -- |
| 309.94 | 0.825 | 3 | 0.613 | 0.171 | -- | 0.387 | -- | 0.103 | 2.94 | -- | -- | -- | -- |
| 310.27 | 0.825 | 3.01 | 0.604 | 0.176 | -- | -- | -- | 0.101 | 1.74 | -- | -- | -- | -- |
| 304.74 | 0.813 | 3 | 0.614 | -- | 0.304 | -- | -- | 0.116 | -- | 16.1 | 151 | -- | -- |
| 308.63 | 0.818 | 3.03 | -- | 0.476 | 0.62 | -- | -- | 0.0559 | 13.1 | 10 | 152 | -- | -- |
| 312.15 | 0.826 | 3 | 0.612 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 319.9 | 0.837 | 3.02 | -- | 0.187 | -- | -- | -- | 0.0337 | 1.83 | -- | -- | -- | -- |
| 314.68 | 0.826 | 3.02 | -- | -- | 0.288 | -- | -- | 0.0429 | -- | 10.87 | 150 | -- | -- |
| 322.01 | 0.838 | 3.02 | -- | -- | -- | -- | -- | 0.0371 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 275.42 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 4 | 17 |
| 11 | 277.14 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 12 | 277.25 | radiation | 1.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 14 | 277.80 | humidity | 90.0 | 30 | > th | dose independent | rect. | 4 | 17 |
| 30 | 280.11 | radiation | 1.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 34 | 280.39 | radiation | 1.0 | 90 | < th | dose independent | sin | 0 | NA |
| 35 | 280.50 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 2 | 18 |
| 41 | 280.74 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 4 | 19 |
| 50 | 281.09 | radiation | 1.0 | 90 | > th | dose independent | sin | 0 | NA |
| 51 | 281.10 | humidity | 80.0 | 10 | > th | dose independent | rect. | 17 | 3 |
| 76 | 282.03 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 17 | 3 |
| 97 | 282.46 | radiation | 1.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 118 | 282.81 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 125 | 283.01 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 19 |
| 164 | 284.00 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 165 | 284.01 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 171 | 284.10 | radiation | 1.0 | 30 | < th | dose independent | rect. | 5 | 1 |
| 178 | 284.27 | temperature | 25.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 179 | 284.31 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 2 | 21 |
| 183 | 284.36 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 187 | 284.41 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 228 | 285.12 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 17 | 1 |
| 247 | 285.23 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 23 |
| 258 | 285.36 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 16 | 15 |
| 262 | 285.38 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 266 | 285.43 | temperature | 25.0 | 30 | < th | dose independent | rect. | 4 | 17 |
| 267 | 285.44 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 17 | 1 |
| 269 | 285.44 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 273 | 285.51 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 280 | 285.60 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 1 |
| 292 | 285.80 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 293 | 285.82 | humidity | 70.0 | 90 | > th | dose independent | rect. | 16 | 15 |
| 298 | 285.89 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 12 |
| 312 | 285.96 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 12 | 9 |
| 317 | 286.00 | temperature | 25.0 | 30 | < th | dose independent | rect. | 16 | 4 |
| 328 | 286.14 | wind | 3.0 | 10 | < th | dose dependent | rect. | 5 | 2 |
| 329 | 286.14 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 332 | 286.16 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 16 | 22 |
| 337 | 286.24 | humidity | 80.0 | 30 | > th | dose independent | rect. | 13 | 7 |
| 354 | 286.37 | radiation | 1.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 374 | 286.45 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 386 | 286.50 | radiation | 10.0 | 30 | < th | dose independent | rect. | 10 | 3 |
| 401 | 286.57 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 23 |
| 441 | 286.81 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 443 | 286.83 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 12 | 19 |
| 447 | 286.85 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 482 | 287.08 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 3 |
| 494 | 287.16 | humidity | 90.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 522 | 287.27 | humidity | 80.0 | 10 | > th | dose independent | rect. | 2 | 21 |
| 529 | 287.29 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 23 |
| 543 | 287.38 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 565 | 287.51 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 566 | 287.51 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 3 |
| 631 | 287.81 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 19 |
| 648 | 287.91 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 5 | 10 |
| 665 | 287.95 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 713 | 288.14 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 23 |
| 714 | 288.14 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 719 | 288.17 | radiation | 1.0 | 90 | < th | dose independent | rect. | 8 | 23 |
| 720 | 288.17 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 756 | 288.30 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 787 | 288.44 | wind | 3.0 | 10 | < th | dose dependent | rect. | 2 | 7 |
| 893 | 288.79 | humidity | 90.0 | 270 | > th | dose independent | rect. | 2 | 4 |