Os03g0411300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EF-Hand type domain containing protein.
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Os03g0411300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EF-Hand type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 199.45 | 0.664 | 12.2 | -0.825 | 4.34 | -5.36 | 1.83 | -3.59 | -0.000577 | 19.3 | 14.78 | 759 | 17.6 | 4.98 |
| 215.31 | 0.683 | 12.2 | -0.363 | 4.61 | -5 | 1.96 | -- | 0.0779 | 18.8 | 15.78 | 791 | 17.2 | 5.3 |
| 205.66 | 0.668 | 12.3 | -0.86 | 4.34 | -5.31 | -- | -3.74 | 0.00142 | 19.2 | 14.83 | 771 | 17.5 | 5.28 |
| 225.54 | 0.699 | 12.2 | -0.316 | 4.69 | -5.8 | -- | -- | 0.129 | 19.5 | 13.8 | 805 | 16.6 | 5.82 |
| 286.93 | 0.789 | 12.2 | -0.944 | -- | -8.52 | -- | -4.49 | 0.0236 | -- | 4.464 | 708 | 18.3 | 9.53 |
| 534.06 | 1.08 | 12.3 | -1.12 | 7.37 | -- | 4.81 | -- | -0.445 | 16.9 | -- | -- | -- | -- |
| 593.61 | 1.14 | 12.3 | -1.1 | 7.41 | -- | -- | -- | -0.421 | 16.9 | -- | -- | -- | -- |
| 285.78 | 0.787 | 12 | -0.391 | -- | -8.6 | -- | -- | 0.222 | -- | 9.882 | 620 | 19.8 | 7.9 |
| 227.21 | 0.702 | 12.2 | -- | 4.67 | -5.81 | -- | -- | 0.14 | 19.5 | 13.84 | 801 | 16.7 | 5.92 |
| 3485.98 | 2.76 | 12.2 | -1.38 | -- | -- | -- | -- | -0.612 | -- | -- | -- | -- | -- |
| 625.67 | 1.17 | 12.3 | -- | 7.43 | -- | -- | -- | -0.298 | 16.9 | -- | -- | -- | -- |
| 283.17 | 0.784 | 12.1 | -- | -- | -8.65 | -- | -- | 0.252 | -- | 9.439 | 610 | 19.7 | 8.62 |
| 3535.94 | 2.78 | 12.2 | -- | -- | -- | -- | -- | -0.459 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 216.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 5 | 222.41 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 35 | 247.52 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 37 | 247.74 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 1 |
| 41 | 249.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 66 | 258.82 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 3 |
| 86 | 262.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 117 | 270.44 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 125 | 273.41 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 5 |
| 128 | 273.94 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 146 | 276.80 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 152 | 277.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 153 | 277.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 167 | 278.99 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 2 |
| 197 | 283.75 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 17 |
| 206 | 284.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 258 | 291.85 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 275 | 293.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 287 | 295.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 17 |
| 333 | 300.22 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 7 |
| 368 | 302.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 378 | 303.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 427 | 305.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 19 |
| 464 | 305.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 465 | 305.74 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 472 | 305.85 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 480 | 306.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 15 |
| 519 | 306.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 548 | 306.87 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 567 | 307.11 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 10 |
| 601 | 307.79 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 603 | 307.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 7 |
| 609 | 307.89 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 616 | 308.01 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 626 | 308.11 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 735 | 309.52 | wind | 3 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 792 | 310.33 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 5 |
| 820 | 310.78 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 851 | 311.01 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 895 | 311.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 915 | 311.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 12 |