BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0411300 Os03g0411300|J075091K10
(158 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44310.1 | chr2:18309285-18309713 FORWARD LENGTH=143 142 8e-35
AT1G54530.1 | chr1:20366505-20366888 FORWARD LENGTH=128 57 3e-09
AT5G28830.1 | chr5:10856801-10858394 FORWARD LENGTH=325 57 5e-09
>AT2G44310.1 | chr2:18309285-18309713 FORWARD LENGTH=143
Length = 142
Score = 142 bits (358), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 96/128 (75%), Gaps = 2/128 (1%)
Query: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALDANGDGVLSRAELRRALESFRLLDGAGF 60
M VV++DGSTVR FV D++ F +SVD RF ALD N DGVLSR+ELR+A ES RLL+ + F
Sbjct: 1 MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLE-SHF 59
Query: 61 GSAEPAPLPAEVSALYDSVFEQFDADHSGAVDRAEFRDQMRRIMLAVADGLGSQPLQVAV 120
G P E++ LYDS+FE+FD D SG+VD EFR +M++I+LA+ADGLGS P+ + +
Sbjct: 60 GVDVVTP-QDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVL 118
Query: 121 DDEGGSFL 128
DD+ +FL
Sbjct: 119 DDDDDNFL 126
>AT1G54530.1 | chr1:20366505-20366888 FORWARD LENGTH=128
Length = 127
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 1 MSVVILDGSTVRGFVADDDAFARSVDARFEALDANGDGVLSRAELRRALESFRLLDGAGF 60
M ++ T+ GF++D +F + F+ LD + +G+LS +ELR+ L + ++
Sbjct: 1 MIETVITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVE---- 56
Query: 61 GSAEPAPLPAEVSALYDSVFEQFDADHSGAVDRAEFRDQMRRIMLAVADGLGSQPLQVAV 120
+E AP E +Y+++FE+F D + FRD + I+ A+A G+G+ P+ + V
Sbjct: 57 --SEVAP-GDETDNVYNAIFERFGED----LVPKNFRDLIAEILTAMARGIGNSPVIMVV 109
Query: 121 DDEG 124
++G
Sbjct: 110 HNDG 113
>AT5G28830.1 | chr5:10856801-10858394 FORWARD LENGTH=325
Length = 324
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 3 VVILDGSTVRGFVADDDAFARSVDARFEALDANGDGVLSRAELRRALESFRLLDGAGFGS 62
V ILDG+ ++ F+ D+D FA + F LD G L ++E+R+AL G G
Sbjct: 103 VSILDGTMLKMFLEDEDDFAMLAENLFTDLDEEDKGKLCKSEIRKALVHM----GVEMGV 158
Query: 63 AEPAPLPAEVSALYDSVFEQFDADHSGAVDRAEFRDQMRRIMLAVADGLGSQPLQVAVDD 122
+ P + D + ++ DAD + +A+F + +++++ +AD L +P+ + ++
Sbjct: 159 PPLSEFP-----ILDDIIKKHDADSDEELGQAQFAELLQQVLQEIADVLHEKPITIVLNV 213
Query: 123 E 123
E
Sbjct: 214 E 214
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,607,583
Number of extensions: 95238
Number of successful extensions: 416
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 421
Number of HSP's successfully gapped: 3
Length of query: 158
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 68
Effective length of database: 8,639,129
Effective search space: 587460772
Effective search space used: 587460772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)